GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002407-TA|BGIBMGA002407-PA|IPR001763|Rhodanese-like
         (101 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48621-2|CAA88547.1|  536|Caenorhabditis elegans Hypothetical pr...    27   1.8  
Z50005-1|CAA90294.1|  334|Caenorhabditis elegans Hypothetical pr...    27   3.1  
AL110477-17|CAJ43446.1|  332|Caenorhabditis elegans Hypothetical...    26   4.1  
AF014940-7|AAB63939.2|  135|Caenorhabditis elegans Hypothetical ...    26   4.1  
Z81457-5|CAB03817.2|  584|Caenorhabditis elegans Hypothetical pr...    26   5.5  
Z81029-4|CAB02700.1|  300|Caenorhabditis elegans Hypothetical pr...    25   9.6  
U64855-1|AAB04980.1|  594|Caenorhabditis elegans Hypothetical pr...    25   9.6  
U58761-7|AAB00717.1|  481|Caenorhabditis elegans Hypothetical pr...    25   9.6  
U28941-3|AAM98025.1|  799|Caenorhabditis elegans Temporarily ass...    25   9.6  
U28941-2|AAC71103.1| 1091|Caenorhabditis elegans Temporarily ass...    25   9.6  
U28941-1|AAC71102.1| 1107|Caenorhabditis elegans Temporarily ass...    25   9.6  
AL132951-2|CAC44305.1|  561|Caenorhabditis elegans Hypothetical ...    25   9.6  

>Z48621-2|CAA88547.1|  536|Caenorhabditis elegans Hypothetical
           protein R07B1.3 protein.
          Length = 536

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 4/51 (7%)

Query: 24  LIDVRNPDEVNTTGKIPSSINIP----LNSVQEVLVSMSNEEFKKQYQRNK 70
           L +V NPDEV   G  P  I +     L S Q+     S+++ K  YQ  K
Sbjct: 71  LFNVTNPDEVKYLGAKPELIEVGGYAFLESEQKKYYEFSSDKTKMFYQNYK 121


>Z50005-1|CAA90294.1|  334|Caenorhabditis elegans Hypothetical
           protein F16H9.2 protein.
          Length = 334

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 14/33 (42%), Positives = 18/33 (54%)

Query: 47  LNSVQEVLVSMSNEEFKKQYQRNKPSSTDELIF 79
           LNS Q V  S   +     YQRN PS  ++L+F
Sbjct: 262 LNSYQNVYRSALFQYCSTAYQRNGPSRFNDLLF 294


>AL110477-17|CAJ43446.1|  332|Caenorhabditis elegans Hypothetical
           protein Y113G7B.1b protein.
          Length = 332

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 9/22 (40%), Positives = 13/22 (59%)

Query: 70  KPSSTDELIFYCQSGRRSTEAL 91
           KP   +E++F+C SG  S   L
Sbjct: 188 KPGFLEEIVFFCHSGHESIHEL 209


>AF014940-7|AAB63939.2|  135|Caenorhabditis elegans Hypothetical
          protein W02D7.8 protein.
          Length = 135

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 3/53 (5%)

Query: 29 NPDEVNTTGKIPSSINIPLNSVQEVLVSMSNEEFKKQYQRNKPSSTDELIFYC 81
          NP   +++ +IP  I+ P  ++ E     S  +F   Y  N  + TDEL  YC
Sbjct: 2  NPS-TSSSVEIPKPISSPRRTLPEA--PPSYYDFPPSYTSNGETFTDELPAYC 51


>Z81457-5|CAB03817.2|  584|Caenorhabditis elegans Hypothetical
           protein C01G12.7 protein.
          Length = 584

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 13/43 (30%), Positives = 21/43 (48%)

Query: 3   DPRRVVSYEDVLKVIHQPEKVLIDVRNPDEVNTTGKIPSSINI 45
           +P R  SY +   V H  E V+   +   E + T K+P+ I +
Sbjct: 458 EPSRKPSYVECAPVEHHHEVVIHQAQPEPEFSKTPKLPNVIRV 500


>Z81029-4|CAB02700.1|  300|Caenorhabditis elegans Hypothetical
           protein C01A2.5 protein.
          Length = 300

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)

Query: 26  DVRNPD--EVNTTGKIPSSINIPLNSVQEVLVS 56
           DV+  D  +VN T  I    N+P+N +Q  LV+
Sbjct: 101 DVKGDDYNDVNQTEFICPITNVPMNGIQSFLVN 133


>U64855-1|AAB04980.1|  594|Caenorhabditis elegans Hypothetical
           protein ZK742.2 protein.
          Length = 594

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 12/48 (25%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 8   VSYEDVLKVIHQPEKVLIDVRNPDEVNTTGKIPSSINIPLNSVQEVLV 55
           +S +D+L ++   EK+ +DV++ DE     + P    I + + + V +
Sbjct: 356 ISIDDIL-MVQYAEKLEVDVKSKDESEKITESPEKHKIEMKNEKPVKI 402


>U58761-7|AAB00717.1|  481|Caenorhabditis elegans Hypothetical
           protein C01F1.1 protein.
          Length = 481

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 10/20 (50%), Positives = 14/20 (70%)

Query: 59  NEEFKKQYQRNKPSSTDELI 78
           NEE  ++Y R KP +T EL+
Sbjct: 412 NEETVRRYLRRKPHTTKELL 431


>U28941-3|AAM98025.1|  799|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 149, isoform d protein.
          Length = 799

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 17/79 (21%), Positives = 35/79 (44%), Gaps = 1/79 (1%)

Query: 1   MVDPRRVVSYEDV-LKVIHQPEKVLIDVRNPDEVNTTGKIPSSINIPLNSVQEVLVSMSN 59
           + +P+R+   E   L+ ++Q   + +D+     +    K P     PL   Q+V+ ++ N
Sbjct: 523 VAEPKRISPTEAAQLQELYQEYDLGLDLPGVAPIQGVAKPPVQQRTPLQIQQQVVQNVQN 582

Query: 60  EEFKKQYQRNKPSSTDELI 78
           +      Q + P S   +I
Sbjct: 583 QPNMMARQNSVPESPRTVI 601


>U28941-2|AAC71103.1| 1091|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 149, isoform a protein.
          Length = 1091

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 17/79 (21%), Positives = 35/79 (44%), Gaps = 1/79 (1%)

Query: 1   MVDPRRVVSYEDV-LKVIHQPEKVLIDVRNPDEVNTTGKIPSSINIPLNSVQEVLVSMSN 59
           + +P+R+   E   L+ ++Q   + +D+     +    K P     PL   Q+V+ ++ N
Sbjct: 523 VAEPKRISPTEAAQLQELYQEYDLGLDLPGVAPIQGVAKPPVQQRTPLQIQQQVVQNVQN 582

Query: 60  EEFKKQYQRNKPSSTDELI 78
           +      Q + P S   +I
Sbjct: 583 QPNMMARQNSVPESPRTVI 601


>U28941-1|AAC71102.1| 1107|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 149, isoform b protein.
          Length = 1107

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 17/79 (21%), Positives = 35/79 (44%), Gaps = 1/79 (1%)

Query: 1   MVDPRRVVSYEDV-LKVIHQPEKVLIDVRNPDEVNTTGKIPSSINIPLNSVQEVLVSMSN 59
           + +P+R+   E   L+ ++Q   + +D+     +    K P     PL   Q+V+ ++ N
Sbjct: 523 VAEPKRISPTEAAQLQELYQEYDLGLDLPGVAPIQGVAKPPVQQRTPLQIQQQVVQNVQN 582

Query: 60  EEFKKQYQRNKPSSTDELI 78
           +      Q + P S   +I
Sbjct: 583 QPNMMARQNSVPESPRTVI 601


>AL132951-2|CAC44305.1|  561|Caenorhabditis elegans Hypothetical
           protein Y67H2A.4a protein.
          Length = 561

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 8/19 (42%), Positives = 14/19 (73%)

Query: 5   RRVVSYEDVLKVIHQPEKV 23
           RR++ YED L++   P+K+
Sbjct: 190 RRIIEYEDRLRLYSTPDKI 208


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.313    0.131    0.357 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,508,274
Number of Sequences: 27539
Number of extensions: 96213
Number of successful extensions: 224
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 219
Number of HSP's gapped (non-prelim): 12
length of query: 101
length of database: 12,573,161
effective HSP length: 70
effective length of query: 31
effective length of database: 10,645,431
effective search space: 330008361
effective search space used: 330008361
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 52 (25.0 bits)