GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002407-TA|BGIBMGA002407-PA|IPR001763|Rhodanese-like
         (101 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   1.3  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   2.2  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   2.2  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 1.3
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 3/63 (4%)

Query: 14  LKVIHQPEKVLIDVRNPDEVNTTGKIPSSINIPLNSVQEVLVSMSNEEFKKQYQRNKPSS 73
           L  + +  K L  V NP+   +TG +    N P + V+E  VS +     +    N  SS
Sbjct: 299 LAKMEKTSKPLPMVDNPE---STGNLVYIYNNPFSDVEERRVSKTAMNSNQIVSDNSLSS 355

Query: 74  TDE 76
           ++E
Sbjct: 356 SEE 358


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.4 bits (43), Expect = 2.2
 Identities = 7/13 (53%), Positives = 11/13 (84%)

Query: 16  VIHQPEKVLIDVR 28
           VIHQP  ++ID++
Sbjct: 139 VIHQPRIIIIDLK 151


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.4 bits (43), Expect = 2.2
 Identities = 9/22 (40%), Positives = 13/22 (59%)

Query: 28  RNPDEVNTTGKIPSSINIPLNS 49
           R PD  + T K P  ++ PLN+
Sbjct: 182 RTPDPHDETAKKPRVLSPPLNN 203


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.313    0.131    0.357 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,304
Number of Sequences: 429
Number of extensions: 1018
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 101
length of database: 140,377
effective HSP length: 49
effective length of query: 52
effective length of database: 119,356
effective search space:  6206512
effective search space used:  6206512
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.1 bits)
S2: 38 (19.4 bits)