Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002406-TA|BGIBMGA002406-PA|IPR012336|Thioredoxin-like
fold, IPR000866|Alkyl hydroperoxide reductase/ Thiol specific
antioxidant/ Mal allergen
(194 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyc... 253 1e-68
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 27 2.4
SPAC1952.09c |||acetyl-CoA hydrolase|Schizosaccharomyces pombe|c... 26 3.2
SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr 2... 26 3.2
SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy... 25 5.5
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ... 25 5.5
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa... 25 7.3
SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr 3||... 25 9.7
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom... 25 9.7
>SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 192
Score = 253 bits (619), Expect = 1e-68
Identities = 113/189 (59%), Positives = 145/189 (76%), Gaps = 2/189 (1%)
Query: 2 ISKPAPEWEATAVVNGEFTQLSLSSFKGKYLVFFFYPLDFTFVCPTEILAFYERIEEFRK 61
I KPAP+++ TAVVNG F ++ L+ +KGK++ FYPLDFTFVCPTEI+AF E +F +
Sbjct: 5 IGKPAPDFKGTAVVNGAFEEIKLADYKGKWVFLGFYPLDFTFVCPTEIVAFSEAASKFAE 64
Query: 62 INTEVVACSVDSHFTHLAWINTPRKEGGLGKINIPLLSDLTHSIAKDYGVYLEDLGHTLR 121
N +V+ S DS ++HLA+INTPRKEGGLG INIPLL+D +H +++DYGV +ED G R
Sbjct: 65 RNAQVILTSTDSEYSHLAFINTPRKEGGLGGINIPLLADPSHKVSRDYGVLIEDAGVAFR 124
Query: 122 GLFIMDDKGILRQITMNDLPVGRSVDETLRLVQAFQYTDNHGEVCPAGWKPGQDTIIPNP 181
GLF++D KG+LRQIT+NDLPVGRSVDE LRL+ AFQ+ + HGEVCPA W G DTI +
Sbjct: 125 GLFLIDPKGVLRQITINDLPVGRSVDEALRLLDAFQFVEEHGEVCPANWHKGSDTI--DT 182
Query: 182 SEKKKYFEK 190
+KYF K
Sbjct: 183 KNPEKYFSK 191
>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
Cct1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 26.6 bits (56), Expect = 2.4
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 46 PTEILAFYE-RIEEFRKINTEVVACSVDS 73
PT I+ Y I E K T+V++CSVDS
Sbjct: 119 PTTIITGYRLAIREAVKFMTDVLSCSVDS 147
>SPAC1952.09c |||acetyl-CoA hydrolase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 521
Score = 26.2 bits (55), Expect = 3.2
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 87 EGGLGKINIPLLSDLTHSIAKDYGVYLEDLGHTLRGLF 124
+ G+G I ++ L HS KD V+ E L T LF
Sbjct: 274 QSGIGNIANAIIGGLAHSPFKDLEVWTEVLQDTFLPLF 311
>SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 470
Score = 26.2 bits (55), Expect = 3.2
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 6/73 (8%)
Query: 37 YPLDFTFVCPTEILAFYERIEEFRKINTEVVACSVDSHFTHLAWINTPRKEGGLGKINIP 96
Y L F P ++ ++R E +NT + + D +N RK G LG+ IP
Sbjct: 364 YILQFLSRVPGQLERMFQRYELPPLLNTSDIDTATDF------LVNIARKRGRLGRGGIP 417
Query: 97 LLSDLTHSIAKDY 109
L+ + + D+
Sbjct: 418 NLNAAANIVINDW 430
>SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 523
Score = 25.4 bits (53), Expect = 5.5
Identities = 9/22 (40%), Positives = 16/22 (72%)
Query: 95 IPLLSDLTHSIAKDYGVYLEDL 116
I L+ D+ + ++K +G+Y EDL
Sbjct: 468 IELIDDIRYFLSKRFGIYHEDL 489
>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1026
Score = 25.4 bits (53), Expect = 5.5
Identities = 14/44 (31%), Positives = 20/44 (45%)
Query: 5 PAPEWEATAVVNGEFTQLSLSSFKGKYLVFFFYPLDFTFVCPTE 48
P P +E + +G+F S + K K + YP TF TE
Sbjct: 271 PEPHFELISKYSGDFPWKSCTILKSKPVSLCVYPEKITFNWLTE 314
>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
Nup132|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1162
Score = 25.0 bits (52), Expect = 7.3
Identities = 23/100 (23%), Positives = 40/100 (40%), Gaps = 9/100 (9%)
Query: 39 LDFTFVCPTEILAFYERIEEFRKINTEVVACSVDSHFTHLAWINTPRKEGGLGKINIPLL 98
LD ILA +R+ + ++ S+D+ + W +TP + +
Sbjct: 634 LDVIMEANEVILAIQSSALAYRRESQKIYKLSIDTFGEEVPWTSTPET-----LVLLCRQ 688
Query: 99 SDLTHSIAKDYGVYLEDLGHTLRGLFIMDDKGILRQITMN 138
+LT S D+ +T F + DKG+LR + N
Sbjct: 689 FELTRSALVQSHQGTSDVENT----FKIKDKGVLRNVVSN 724
>SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 465
Score = 24.6 bits (51), Expect = 9.7
Identities = 12/43 (27%), Positives = 19/43 (44%)
Query: 38 PLDFTFVCPTEILAFYERIEEFRKINTEVVACSVDSHFTHLAW 80
PL F E+L F + + + C +D HF HL++
Sbjct: 253 PLGKYFTTEDEVLNFRRKTYHALVVFLFLPVCCLDPHFLHLSF 295
>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1067
Score = 24.6 bits (51), Expect = 9.7
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 170 WKPGQDTIIPNPSEKKKYFEKVAK 193
W+PG +P P K FE V K
Sbjct: 720 WQPGLPLKVPVPDTVKNIFEAVRK 743
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.321 0.139 0.427
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 974,377
Number of Sequences: 5004
Number of extensions: 41104
Number of successful extensions: 81
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 74
Number of HSP's gapped (non-prelim): 10
length of query: 194
length of database: 2,362,478
effective HSP length: 69
effective length of query: 125
effective length of database: 2,017,202
effective search space: 252150250
effective search space used: 252150250
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 51 (24.6 bits)
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