Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002406-TA|BGIBMGA002406-PA|IPR012336|Thioredoxin-like
fold, IPR000866|Alkyl hydroperoxide reductase/ Thiol specific
antioxidant/ Mal allergen
(194 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0116 + 19901546-19901737,19901825-19901899,19902034-199021... 147 6e-36
04_03_0889 + 20568984-20569037,20569271-20569345,20569981-205700... 101 4e-22
07_03_1427 + 26495072-26495148,26495323-26495468,26495581-264957... 73 2e-13
06_01_0671 - 4899611-4899829,4900870-4901448 70 1e-12
07_03_1428 + 26498201-26498318,26498422-26498570,26498685-26499080 58 4e-09
11_06_0736 - 26784531-26785814 27 7.5
02_01_0138 + 999809-999821,1000456-1001341,1001424-1003221,10037... 27 7.5
>02_04_0116 +
19901546-19901737,19901825-19901899,19902034-19902115,
19902219-19902298,19903279-19903482,19903625-19903750,
19903872-19903985,19904802-19904918
Length = 329
Score = 147 bits (356), Expect = 6e-36
Identities = 64/118 (54%), Positives = 87/118 (73%), Gaps = 1/118 (0%)
Query: 75 FTHLAWINTPRKEGGLGKINIPLLSDLTHSIAKDYGVYLEDLGHTLRGLFIMDDKGILRQ 134
F+HLAW+ T RK GGLG + PL+SD+T SI+K +GV + D G LRGLFI+D +G+++
Sbjct: 212 FSHLAWVQTDRKSGGLGDLKYPLISDVTKSISKSFGVLIPDQGIALRGLFIIDKEGVIQH 271
Query: 135 ITMNDLPVGRSVDETLRLVQAFQYT-DNHGEVCPAGWKPGQDTIIPNPSEKKKYFEKV 191
T+N+L +GRSVDET+R +QA QY DN EVCPAGWKPG ++ P+P K+YF +
Sbjct: 272 STINNLAIGRSVDETMRTLQALQYVQDNPDEVCPAGWKPGDKSMKPDPKGSKEYFAAI 329
Score = 90.6 bits (215), Expect = 7e-19
Identities = 39/74 (52%), Positives = 55/74 (74%), Gaps = 1/74 (1%)
Query: 1 MISKPAPEWEATAVVNGEFTQLSLSSFKGK-YLVFFFYPLDFTFVCPTEILAFYERIEEF 59
++ AP+++A AV + EF + LS + GK Y++ FFYPLDFTFVCPTEI AF +R +EF
Sbjct: 69 LVGNKAPDFDAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYDEF 128
Query: 60 RKINTEVVACSVDS 73
K+NTE++ S+DS
Sbjct: 129 EKLNTEILGVSIDS 142
>04_03_0889 +
20568984-20569037,20569271-20569345,20569981-20570088,
20572066-20572179,20572393-20572509
Length = 155
Score = 101 bits (242), Expect = 4e-22
Identities = 43/83 (51%), Positives = 63/83 (75%), Gaps = 1/83 (1%)
Query: 110 GVYLEDLGHTLRGLFIMDDKGILRQITMNDLPVGRSVDETLRLVQAFQYT-DNHGEVCPA 168
GV ++ +G LRGLFI+D +G+++ T+N+L +GRSVDETLR +QA QY +N EVCPA
Sbjct: 73 GVSIDSVGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQENPDEVCPA 132
Query: 169 GWKPGQDTIIPNPSEKKKYFEKV 191
GWKPG+ ++ P+P + K+YF +
Sbjct: 133 GWKPGEKSMKPDPKDSKEYFASI 155
Score = 41.5 bits (93), Expect = 4e-04
Identities = 23/46 (50%), Positives = 27/46 (58%)
Query: 43 FVCPTEILAFYERIEEFRKINTEVVACSVDSHFTHLAWINTPRKEG 88
FV EI AF +R EEF KINTEV+ S+DS L + KEG
Sbjct: 48 FVSSAEITAFSDRYEEFEKINTEVLGVSIDSVGIALRGLFIIDKEG 93
>07_03_1427 +
26495072-26495148,26495323-26495468,26495581-26495729,
26495829-26496224
Length = 255
Score = 72.9 bits (171), Expect = 2e-13
Identities = 47/166 (28%), Positives = 75/166 (45%), Gaps = 7/166 (4%)
Query: 21 QLSLSSFKGK-YLVFFFYPLDFTFVCPTEILAFYERIEEFRKINTEVVACSVDSHFTHLA 79
++ + F G Y++ F +P DFT VC TE+ A +EF K +++ S D +H
Sbjct: 56 KIRIHDFVGDTYVILFSHPGDFTPVCTTELAAMAGYAKEFDKRGVKLLGISCDDVQSHKD 115
Query: 80 WINTPRKEGGLGKINIPLLSDLTHSIAKDYGVYLEDL-----GH-TLRGLFIMDDKGILR 133
WI ++ P+++D + K + D GH R L I+ ++
Sbjct: 116 WIKDIEAYKPGNRVTYPIMADPSREAIKQLNMVDPDEKDSNGGHLPSRALHIVGPDKKVK 175
Query: 134 QITMNDLPVGRSVDETLRLVQAFQYTDNHGEVCPAGWKPGQDTIIP 179
+ VGR++DE +R V A Q H P WKPG+ +IP
Sbjct: 176 LSFLYPACVGRNMDEVVRAVDALQTAAKHAVATPVNWKPGERVVIP 221
>06_01_0671 - 4899611-4899829,4900870-4901448
Length = 265
Score = 69.7 bits (163), Expect = 1e-12
Identities = 45/136 (33%), Positives = 75/136 (55%), Gaps = 10/136 (7%)
Query: 22 LSLSSFKGKYLVFFFYPLDFTFVCPTEILAFYERIEEFRKINTEVVACSVDSHFTHLAWI 81
+SLS FKG+ +V +FYP D T C + AF + E+F+K EV+ S D +H +
Sbjct: 137 VSLSKFKGRPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDAASHKEF- 195
Query: 82 NTPRKEGGLGKINIPLLSDLTHSIAKDYGVYLEDLGHTLRG--LFIMDDKGILRQITMND 139
+K+ K+ LLSD + + K++GV DL TL G +++D G+++ I N
Sbjct: 196 ---KKK---YKLPFTLLSDEGNKVRKEWGV-PADLFGTLPGRQTYVLDKNGVVQYIYNNQ 248
Query: 140 LPVGRSVDETLRLVQA 155
+ + ETL+++Q+
Sbjct: 249 FQPEKHIGETLKILQS 264
>07_03_1428 + 26498201-26498318,26498422-26498570,26498685-26499080
Length = 220
Score = 58.4 bits (135), Expect = 4e-09
Identities = 42/166 (25%), Positives = 67/166 (40%), Gaps = 7/166 (4%)
Query: 21 QLSLSSFKGK-YLVFFFYPLDFTFVCPTEILAFYERIEEFRKINTEVVACSVDSHFTHLA 79
++ L F G Y++ F +P DFT VC TE+ EF K +++ S D +H
Sbjct: 21 KIRLHDFVGDAYVIIFSHPADFTPVCTTELSEMAGYAGEFDKRGVKLLGFSCDDVESHKD 80
Query: 80 WINTPRKEGGLGKINIPLLSDLTHSIAKDYGVYLEDLGHTL------RGLFIMDDKGILR 133
WI ++ P+++D + + D T R L I+ ++
Sbjct: 81 WIKDIEAYKPGRRVGFPIVADPDREAIRQLNMIDADEKDTAGGELPNRALHIVGPDKKVK 140
Query: 134 QITMNDLPVGRSVDETLRLVQAFQYTDNHGEVCPAGWKPGQDTIIP 179
+ GR++ E LR A H P WKPG+ +IP
Sbjct: 141 LSFLFPACTGRNMAEVLRATDALLTAARHRVATPVNWKPGERVVIP 186
>11_06_0736 - 26784531-26785814
Length = 427
Score = 27.5 bits (58), Expect = 7.5
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 142 VGRSVDETLRLVQAFQYTDNHGEVCPAGW 170
+GR+ E+ R+V A YTD EV P GW
Sbjct: 340 LGRAWGESSRVVYA--YTDMSKEVVPVGW 366
>02_01_0138 +
999809-999821,1000456-1001341,1001424-1003221,
1003716-1003805,1004034-1004111,1004513-1004518,
1004849-1004958,1005174-1005369
Length = 1058
Score = 27.5 bits (58), Expect = 7.5
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 48 EILAFYERIEEFRKINTEVVACSVDSHFTHLAWINTPRKEGGLGKINIPLLSDLTHSIAK 107
E+L +++ R N +V S+ S+ L +N P+ E +G I L S + + K
Sbjct: 204 EMLPLLRKLKLIRMWN--LVEVSIPSYLEELVLVNMPKLENCVGTYGIELTSRIRVLMVK 261
Query: 108 D 108
D
Sbjct: 262 D 262
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.321 0.139 0.427
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,024,497
Number of Sequences: 37544
Number of extensions: 243821
Number of successful extensions: 420
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 408
Number of HSP's gapped (non-prelim): 9
length of query: 194
length of database: 14,793,348
effective HSP length: 78
effective length of query: 116
effective length of database: 11,864,916
effective search space: 1376330256
effective search space used: 1376330256
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 57 (27.1 bits)
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