Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002406-TA|BGIBMGA002406-PA|IPR012336|Thioredoxin-like
fold, IPR000866|Alkyl hydroperoxide reductase/ Thiol specific
antioxidant/ Mal allergen
(194 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_14608| Best HMM Match : AhpC-TSA (HMM E-Value=0) 287 3e-78
SB_29430| Best HMM Match : AhpC-TSA (HMM E-Value=0.00012) 171 4e-43
SB_22073| Best HMM Match : No HMM Matches (HMM E-Value=.) 146 1e-35
SB_35139| Best HMM Match : No HMM Matches (HMM E-Value=.) 105 3e-23
SB_33971| Best HMM Match : AhpC-TSA (HMM E-Value=2e-06) 44 1e-04
SB_52374| Best HMM Match : GATase_2 (HMM E-Value=0) 30 1.4
SB_29266| Best HMM Match : Glyco_hydro_35 (HMM E-Value=0) 29 3.3
SB_53813| Best HMM Match : RA (HMM E-Value=1.1) 27 7.7
>SB_14608| Best HMM Match : AhpC-TSA (HMM E-Value=0)
Length = 265
Score = 287 bits (705), Expect = 3e-78
Identities = 129/176 (73%), Positives = 150/176 (85%), Gaps = 1/176 (0%)
Query: 2 ISKPAPEWEATAV-VNGEFTQLSLSSFKGKYLVFFFYPLDFTFVCPTEILAFYERIEEFR 60
I KPAP + TAV +GEF L LS +KGKY+V FFYPLDFTFVCPTEI+AF +R++EF+
Sbjct: 53 IQKPAPAFSGTAVNKHGEFIDLKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRVDEFK 112
Query: 61 KINTEVVACSVDSHFTHLAWINTPRKEGGLGKINIPLLSDLTHSIAKDYGVYLEDLGHTL 120
IN EV+ACSVDS ++HLAW N PRK+GG+G INIP+LSDLT I+KDYGV LED G L
Sbjct: 113 AINCEVIACSVDSEYSHLAWTNVPRKKGGIGNINIPILSDLTKQISKDYGVLLEDQGVAL 172
Query: 121 RGLFIMDDKGILRQITMNDLPVGRSVDETLRLVQAFQYTDNHGEVCPAGWKPGQDT 176
RGLFI+DDKGILRQIT+NDLPVGRSVDETLRL+QAFQ+TD HGEVCPAGW+PG DT
Sbjct: 173 RGLFIIDDKGILRQITINDLPVGRSVDETLRLIQAFQFTDKHGEVCPAGWRPGADT 228
>SB_29430| Best HMM Match : AhpC-TSA (HMM E-Value=0.00012)
Length = 704
Score = 171 bits (415), Expect = 4e-43
Identities = 76/95 (80%), Positives = 85/95 (89%)
Query: 82 NTPRKEGGLGKINIPLLSDLTHSIAKDYGVYLEDLGHTLRGLFIMDDKGILRQITMNDLP 141
N PRK+GG+G INIP+LSDLT I+KDYGV LED G LRGLFI+DDKGILRQIT+NDLP
Sbjct: 3 NVPRKKGGIGNINIPILSDLTKQISKDYGVLLEDQGVALRGLFIIDDKGILRQITINDLP 62
Query: 142 VGRSVDETLRLVQAFQYTDNHGEVCPAGWKPGQDT 176
VGRSVDETLRL+QAFQ+TD HGEVCPAGW+PG DT
Sbjct: 63 VGRSVDETLRLIQAFQFTDKHGEVCPAGWRPGADT 97
>SB_22073| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 237
Score = 146 bits (354), Expect = 1e-35
Identities = 66/79 (83%), Positives = 70/79 (88%)
Query: 2 ISKPAPEWEATAVVNGEFTQLSLSSFKGKYLVFFFYPLDFTFVCPTEILAFYERIEEFRK 61
ISKPAP WE TAVVNGEF +L LS F+GKYLVFFFYPLDFTFVCPTEI+AF +RIEEFR
Sbjct: 56 ISKPAPFWEGTAVVNGEFKELKLSDFEGKYLVFFFYPLDFTFVCPTEIIAFSDRIEEFRA 115
Query: 62 INTEVVACSVDSHFTHLAW 80
INTEVV CSVDS FTHLAW
Sbjct: 116 INTEVVGCSVDSVFTHLAW 134
Score = 85.8 bits (203), Expect = 2e-17
Identities = 39/45 (86%), Positives = 41/45 (91%)
Query: 118 HTLRGLFIMDDKGILRQITMNDLPVGRSVDETLRLVQAFQYTDNH 162
H GLFI+DDKG+LRQITMNDLPVGRSVDETLRLVQAFQYTD H
Sbjct: 131 HLAWGLFIIDDKGVLRQITMNDLPVGRSVDETLRLVQAFQYTDKH 175
>SB_35139| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 56
Score = 105 bits (251), Expect = 3e-23
Identities = 45/52 (86%), Positives = 50/52 (96%)
Query: 142 VGRSVDETLRLVQAFQYTDNHGEVCPAGWKPGQDTIIPNPSEKKKYFEKVAK 193
VGRSVDETLRLVQAFQYTD HGEVCPAGWKPG+DTIIP+P++KKKYFEK A+
Sbjct: 1 VGRSVDETLRLVQAFQYTDKHGEVCPAGWKPGKDTIIPDPTQKKKYFEKQAQ 52
>SB_33971| Best HMM Match : AhpC-TSA (HMM E-Value=2e-06)
Length = 160
Score = 43.6 bits (98), Expect = 1e-04
Identities = 37/135 (27%), Positives = 55/135 (40%), Gaps = 14/135 (10%)
Query: 70 SVDSHFTHLAWINTPRKEG-----GLGKINIPLLSDLTHSIAKDYGVYLED------LGH 118
S D +H W+ K K N P+++D +A G+ D L
Sbjct: 5 SCDDAESHRGWVKDITKYNLEQNKSSAKFNYPIIADERRELAVKLGMVDPDEKDSKGLPL 64
Query: 119 TLRGLFIMDDKGILRQITMNDLPVGRSVDETLRLVQAFQYTDNHGEVCPAGWKPGQD-TI 177
T R +FI+ L+ + GR+ DE LR++ + Q T P WK G D +
Sbjct: 65 TCRAVFIIGPDKKLKLSILYPATTGRNFDEILRVIDSLQLTATKKVATPVDWKLGGDCMV 124
Query: 178 IPN--PSEKKKYFEK 190
IP+ P E+ F K
Sbjct: 125 IPSIKPEEEGTIFPK 139
>SB_52374| Best HMM Match : GATase_2 (HMM E-Value=0)
Length = 1075
Score = 29.9 bits (64), Expect = 1.4
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 95 IPLLSDLTHSIA--KDYGVYLEDLGHTLRGLFIMDDKGI 131
+P ++DL + IA K G L D GH G+F +D+ I
Sbjct: 392 LPRITDLVNQIAQEKQLGFTLPDSGHYASGIFFLDNDPI 430
>SB_29266| Best HMM Match : Glyco_hydro_35 (HMM E-Value=0)
Length = 568
Score = 28.7 bits (61), Expect = 3.3
Identities = 11/35 (31%), Positives = 23/35 (65%)
Query: 108 DYGVYLEDLGHTLRGLFIMDDKGILRQITMNDLPV 142
D + +E++GH G ++D KGIL +T++++ +
Sbjct: 386 DLDILVENMGHVGYGENMVDPKGILGNVTIDNVQI 420
>SB_53813| Best HMM Match : RA (HMM E-Value=1.1)
Length = 553
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 108 DYGVYLEDLGHTLRGLFIMDDKGILRQITMNDLP 141
D+ LEDLGH + L +D + ++ ND P
Sbjct: 8 DFNKMLEDLGHMIGDLDNLDGVKYINELYCNDAP 41
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.321 0.139 0.427
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,965,289
Number of Sequences: 59808
Number of extensions: 288183
Number of successful extensions: 448
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 440
Number of HSP's gapped (non-prelim): 9
length of query: 194
length of database: 16,821,457
effective HSP length: 78
effective length of query: 116
effective length of database: 12,156,433
effective search space: 1410146228
effective search space used: 1410146228
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 58 (27.5 bits)
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