GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002406-TA|BGIBMGA002406-PA|IPR012336|Thioredoxin-like
fold, IPR000866|Alkyl hydroperoxide reductase/ Thiol specific
antioxidant/ Mal allergen
         (194 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U37429-15|AAN63412.1|  195|Caenorhabditis elegans Peroxiredoxin ...   279   9e-76
Z32683-2|CAA83619.1|  226|Caenorhabditis elegans Hypothetical pr...   245   2e-65
AC024761-15|AAM97968.1|  231|Caenorhabditis elegans Hypothetical...    64   5e-11
U80444-3|AAB37789.1|  326|Caenorhabditis elegans Serpentine rece...    29   2.8  
Z29443-11|CAK55173.1|  367|Caenorhabditis elegans Hypothetical p...    27   6.6  
U80453-11|AAN63452.2|  503|Caenorhabditis elegans Hypothetical p...    27   6.6  
U80453-10|AAN63453.1|  489|Caenorhabditis elegans Hypothetical p...    27   6.6  
U23168-5|ABD63247.1| 2702|Caenorhabditis elegans Temporarily ass...    27   8.7  
U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily ass...    27   8.7  

>U37429-15|AAN63412.1|  195|Caenorhabditis elegans Peroxiredoxin
           protein 2 protein.
          Length = 195

 Score =  279 bits (684), Expect = 9e-76
 Identities = 126/189 (66%), Positives = 151/189 (79%)

Query: 2   ISKPAPEWEATAVVNGEFTQLSLSSFKGKYLVFFFYPLDFTFVCPTEILAFYERIEEFRK 61
           I KPAP+++  AVV+GEF  +SLS +KGKY+V FFYPLDFTFVCPTEI+AF +R EEF+ 
Sbjct: 6   IGKPAPQFKTQAVVDGEFVDVSLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKA 65

Query: 62  INTEVVACSVDSHFTHLAWINTPRKEGGLGKINIPLLSDLTHSIAKDYGVYLEDLGHTLR 121
           INT V+A S DS F+HLAWIN PRK GGLG++NIP+L+D  H I++DYGV  ED G   R
Sbjct: 66  INTVVLAASTDSVFSHLAWINQPRKHGGLGEMNIPVLADTNHQISRDYGVLKEDEGIAFR 125

Query: 122 GLFIMDDKGILRQITMNDLPVGRSVDETLRLVQAFQYTDNHGEVCPAGWKPGQDTIIPNP 181
           GLFI+D    LRQIT+NDLPVGRSVDETLRLVQAFQ+ + HGEVCPAGW PG DTI P  
Sbjct: 126 GLFIIDPSQNLRQITINDLPVGRSVDETLRLVQAFQFVEKHGEVCPAGWTPGSDTIKPGV 185

Query: 182 SEKKKYFEK 190
            E ++YF+K
Sbjct: 186 KESQEYFKK 194


>Z32683-2|CAA83619.1|  226|Caenorhabditis elegans Hypothetical
           protein R07E5.2 protein.
          Length = 226

 Score =  245 bits (599), Expect = 2e-65
 Identities = 109/187 (58%), Positives = 140/187 (74%)

Query: 7   PEWEATAVVNGEFTQLSLSSFKGKYLVFFFYPLDFTFVCPTEILAFYERIEEFRKINTEV 66
           P ++ TAVV+G+F  +S   +KGK+LV FFYPLDFTFVCPTEI+A+ +R  EFR +  EV
Sbjct: 40  PAFKGTAVVDGDFKVISDQDYKGKWLVMFFYPLDFTFVCPTEIIAYGDRANEFRSLGAEV 99

Query: 67  VACSVDSHFTHLAWINTPRKEGGLGKINIPLLSDLTHSIAKDYGVYLEDLGHTLRGLFIM 126
           VACS DSHF+HLAW+NTPRK+GGLG ++IPLL+D    IA  +GV  ++ G + RGLF++
Sbjct: 100 VACSCDSHFSHLAWVNTPRKDGGLGDMDIPLLADFNKKIADSFGVLDKESGLSYRGLFLI 159

Query: 127 DDKGILRQITMNDLPVGRSVDETLRLVQAFQYTDNHGEVCPAGWKPGQDTIIPNPSEKKK 186
           D  G +R  T NDLPVGRSVDETLR+++AFQ++D HGEVCPA W     TI P  +  K+
Sbjct: 160 DPSGTVRHTTCNDLPVGRSVDETLRVLKAFQFSDKHGEVCPADWHEDSPTIKPGVATSKE 219

Query: 187 YFEKVAK 193
           YF KV K
Sbjct: 220 YFNKVNK 226


>AC024761-15|AAM97968.1|  231|Caenorhabditis elegans Hypothetical
           protein Y38C1AA.11 protein.
          Length = 231

 Score = 64.5 bits (150), Expect = 5e-11
 Identities = 46/163 (28%), Positives = 74/163 (45%), Gaps = 11/163 (6%)

Query: 30  KYLVFFFYPLDFTFVCPTEILAFYERIEEFRKINTEVVACSVDSHFTHLAW---INTPRK 86
           ++L+ F +P DFT VC TE+    +   EFRK + +++A S+DS  TH  W   IN+  +
Sbjct: 29  QWLMLFSHPADFTPVCTTELAELVKLAPEFRKRHVQILAISIDSSETHRDWAKDINSVAQ 88

Query: 87  EGGLGK-INIPLLSDLTHSIAKDYGVY------LEDLGHTLRGLFIMDDKGILRQITMND 139
               G  +   +++D   SI  + G+        E +  + R + +      L+   +  
Sbjct: 89  LSNCGSHLPFEIIADTDRSICTELGMIDPDEMNSEGICLSARAVMLFGPDKKLKSKILYP 148

Query: 140 LPVGRSVDETLRLVQAFQYTDNHGEVCPAGWKPGQDTIIPNPS 182
              GR+  E LR+V   Q         PA W  G D +I  PS
Sbjct: 149 ATFGRNFVEILRMVDGVQLGTKAPVATPANWIAG-DNVIAQPS 190


>U80444-3|AAB37789.1|  326|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 14 protein.
          Length = 326

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 19  FTQLSLSSFKGKYLVFFFYPLDFTFVCPT-EILAFYERIEEFRK-INTEVVACSVDSHF 75
           F ++S +S     LVF    L FTF+C    +L   ER +E  K I+   V  S+   F
Sbjct: 193 FKKVSWASQSRFQLVFIIIALSFTFICTAITLLKLPERSKEIEKAISNATVIISIGFTF 251


>Z29443-11|CAK55173.1|  367|Caenorhabditis elegans Hypothetical
           protein T07C4.11 protein.
          Length = 367

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 163 GEVCPAGWKPGQDTIIPNPSEKKKYFEK 190
           GE   +GW   +D ++PN    K+Y +K
Sbjct: 32  GEWSTSGWTAVKDWVLPNGQPNKEYLKK 59


>U80453-11|AAN63452.2|  503|Caenorhabditis elegans Hypothetical
           protein C23H3.9a protein.
          Length = 503

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 123 LFIMDDKGILRQITMNDLPVGRSVDETLRLVQAFQYTDNHGEVCPAGWKPGQDT 176
           L + +D    R  ++ D PVG   D++++L ++    D    + P G +P + T
Sbjct: 92  LILANDFAFCRPASLGDCPVGYLCDQSVKLGRSICCKDTRRGIVPNG-RPARPT 144


>U80453-10|AAN63453.1|  489|Caenorhabditis elegans Hypothetical
           protein C23H3.9b protein.
          Length = 489

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 123 LFIMDDKGILRQITMNDLPVGRSVDETLRLVQAFQYTDNHGEVCPAGWKPGQDT 176
           L + +D    R  ++ D PVG   D++++L ++    D    + P G +P + T
Sbjct: 88  LILANDFAFCRPASLGDCPVGYLCDQSVKLGRSICCKDTRRGIVPNG-RPARPT 140


>U23168-5|ABD63247.1| 2702|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform e protein.
          Length = 2702

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 13/38 (34%), Positives = 16/38 (42%)

Query: 38   PLDFTFVCPTEILAFYERIEEFRKINTEVVACSVDSHF 75
            P +FT VC TE     +    FR    E +    D HF
Sbjct: 2180 PTEFTTVCVTEDKLLIQGAYGFRAAKEESITLDADLHF 2217


>U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform c protein.
          Length = 7548

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 13/38 (34%), Positives = 16/38 (42%)

Query: 38   PLDFTFVCPTEILAFYERIEEFRKINTEVVACSVDSHF 75
            P +FT VC TE     +    FR    E +    D HF
Sbjct: 7026 PTEFTTVCVTEDKLLIQGAYGFRAAKEESITLDADLHF 7063


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.321    0.139    0.427 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,216,596
Number of Sequences: 27539
Number of extensions: 219399
Number of successful extensions: 384
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 377
Number of HSP's gapped (non-prelim): 9
length of query: 194
length of database: 12,573,161
effective HSP length: 78
effective length of query: 116
effective length of database: 10,425,119
effective search space: 1209313804
effective search space used: 1209313804
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 57 (27.1 bits)