GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002406-TA|BGIBMGA002406-PA|IPR012336|Thioredoxin-like
fold, IPR000866|Alkyl hydroperoxide reductase/ Thiol specific
antioxidant/ Mal allergen
         (194 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    25   0.48 
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         21   7.8  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    21   7.8  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    21   7.8  

>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
          finger domain-Z2 isoform protein.
          Length = 71

 Score = 25.0 bits (52), Expect = 0.48
 Identities = 12/25 (48%), Positives = 16/25 (64%)

Query: 54 ERIEEFRKINTEVVACSVDSHFTHL 78
          ER EE+R +  E V CS +S  TH+
Sbjct: 31 ERQEEYRCVICERVYCSRNSLMTHI 55


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 10/38 (26%), Positives = 24/38 (63%)

Query: 123 LFIMDDKGILRQITMNDLPVGRSVDETLRLVQAFQYTD 160
           LF++   GI+ Q T  ++  G S++++L ++  +++ D
Sbjct: 4   LFMLVCLGIVCQGTTGNILRGESLNKSLPILHEWKFFD 41


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 10/38 (26%), Positives = 24/38 (63%)

Query: 123 LFIMDDKGILRQITMNDLPVGRSVDETLRLVQAFQYTD 160
           LF++   GI+ Q T  ++  G S++++L ++  +++ D
Sbjct: 4   LFMLVCLGIVCQGTTGNILRGESLNKSLPILHEWKFFD 41


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 10/38 (26%), Positives = 24/38 (63%)

Query: 123 LFIMDDKGILRQITMNDLPVGRSVDETLRLVQAFQYTD 160
           LF++   GI+ Q T  ++  G S++++L ++  +++ D
Sbjct: 4   LFMLVCLGIVCQGTTGNILRGESLNKSLPILHEWKFFD 41


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.139    0.427 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 57,331
Number of Sequences: 429
Number of extensions: 2482
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 194
length of database: 140,377
effective HSP length: 54
effective length of query: 140
effective length of database: 117,211
effective search space: 16409540
effective search space used: 16409540
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 42 (21.0 bits)