Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002405-TA|BGIBMGA002405-PA|IPR001971|Ribosomal protein
S11
(151 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P62263 Cluster: 40S ribosomal protein S14; n=231; cellu... 200 1e-50
UniRef50_Q4Q6S9 Cluster: 40S ribosomal protein S14; n=1; Leishma... 135 4e-31
UniRef50_Q01E13 Cluster: 40S ribosomal protein S14; n=1; Ostreoc... 130 2e-29
UniRef50_Q58NR0 Cluster: Ribosomal protein S14; n=6; Eukaryota|R... 115 5e-25
UniRef50_P54021 Cluster: 30S ribosomal protein S11P; n=15; Archa... 111 6e-24
UniRef50_A0RWI9 Cluster: 30S ribosomal protein S11P; n=2; Thermo... 108 6e-23
UniRef50_Q3LWB9 Cluster: Ribosomal protein S14; n=1; Bigelowiell... 107 1e-22
UniRef50_A0SNY7 Cluster: 30S ribosomal protein S11; n=1; uncultu... 103 1e-21
UniRef50_A7QYG3 Cluster: Chromosome chr17 scaffold_246, whole ge... 68 1e-10
UniRef50_A5BMD1 Cluster: Putative uncharacterized protein; n=1; ... 64 9e-10
UniRef50_A4D1M5 Cluster: Similar to ribosomal protein S14; n=3; ... 60 2e-08
UniRef50_UPI0000DBF82A Cluster: UPI0000DBF82A related cluster; n... 55 6e-07
UniRef50_P59378 Cluster: 30S ribosomal protein S11; n=48; Bacter... 52 5e-06
UniRef50_A6PT07 Cluster: Ribosomal protein S11; n=1; Victivallis... 51 9e-06
UniRef50_Q5LW33 Cluster: 30S ribosomal protein S11; n=15; Bacter... 51 1e-05
UniRef50_A6YE90 Cluster: Ribosomal protein S11; n=5; cellular or... 50 2e-05
UniRef50_A3A282 Cluster: Putative uncharacterized protein; n=3; ... 50 2e-05
UniRef50_Q12G79 Cluster: 30S ribosomal protein S11; n=186; cellu... 48 7e-05
UniRef50_P59375 Cluster: 30S ribosomal protein S11; n=85; cellul... 48 9e-05
UniRef50_Q1IS96 Cluster: 30S ribosomal protein S11; n=274; cellu... 46 3e-04
UniRef50_P04969 Cluster: 30S ribosomal protein S11; n=155; cellu... 46 5e-04
UniRef50_Q98Q07 Cluster: 30S ribosomal protein S11; n=33; Bacter... 42 0.004
UniRef50_A0NHE9 Cluster: Ribosomal protein S11; n=1; Oenococcus ... 42 0.006
UniRef50_Q6ASY6 Cluster: Small subunit ribosomal protein, putati... 40 0.017
UniRef50_Q0P3I7 Cluster: Rps11; n=1; Ostreococcus tauri|Rep: Rps... 40 0.017
UniRef50_Q2GEB7 Cluster: 30S ribosomal protein S11; n=1; Neorick... 40 0.023
UniRef50_Q4S8D4 Cluster: Chromosome undetermined SCAF14706, whol... 40 0.030
UniRef50_Q9TCB8 Cluster: Ribosomal protein S11; n=1; Nephroselmi... 39 0.040
UniRef50_P47422 Cluster: 30S ribosomal protein S11; n=4; Mycopla... 39 0.053
UniRef50_Q7YDI4 Cluster: Small subunit ribosomal protein; n=29; ... 38 0.070
UniRef50_P56802 Cluster: Chloroplast 30S ribosomal protein S11; ... 38 0.070
UniRef50_Q9PQN5 Cluster: 30S ribosomal protein S11; n=1; Ureapla... 37 0.16
UniRef50_P46746 Cluster: Mitochondrial ribosomal protein S11; n=... 36 0.28
UniRef50_Q9C6S3 Cluster: 30S ribosomal protein S11, putative; n=... 36 0.37
UniRef50_P30059 Cluster: Plastid 30S ribosomal protein S11; n=4;... 36 0.49
UniRef50_UPI0000586F02 Cluster: PREDICTED: hypothetical protein ... 34 1.5
UniRef50_Q9TLV1 Cluster: Chloroplast 30S ribosomal protein S11; ... 34 1.5
UniRef50_Q8W9P7 Cluster: Ribosomal protein S11; n=1; Mesostigma ... 33 2.6
UniRef50_Q49081 Cluster: 30S ribosomal protein; n=1; Mycoplasma ... 32 4.6
UniRef50_A3CMD3 Cluster: Phenylalanyl-tRNA synthetase beta chain... 32 6.1
UniRef50_P25370 Cluster: Good for full DBP5 activity protein 2; ... 32 6.1
>UniRef50_P62263 Cluster: 40S ribosomal protein S14; n=231; cellular
organisms|Rep: 40S ribosomal protein S14 - Homo sapiens
(Human)
Length = 151
Score = 200 bits (488), Expect = 1e-50
Identities = 99/140 (70%), Positives = 106/140 (75%)
Query: 1 MAPRKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGM 60
MAPRK K KEE ++LGPQ GE VFGV HIFASFNDTFVHVTDLSG+ETI RVTGGM
Sbjct: 1 MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGM 60
Query: 61 KVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXX 120
KVKADRDE+SPYAAMLAAQDVA++CK LGITALHIKLRA AQ
Sbjct: 61 KVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALA 120
Query: 121 XXXMKIGRIEDVTPVPSDST 140
MKIGRIEDVTP+PSDST
Sbjct: 121 RSGMKIGRIEDVTPIPSDST 140
>UniRef50_Q4Q6S9 Cluster: 40S ribosomal protein S14; n=1; Leishmania
major|Rep: 40S ribosomal protein S14 - Leishmania major
Length = 203
Score = 135 bits (326), Expect = 4e-31
Identities = 63/90 (70%), Positives = 74/90 (82%), Gaps = 1/90 (1%)
Query: 10 KEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEA 69
K+EV+ GP G+ V+GV HIFASFNDTFVHVTD+SGRET +VTGGMKVKADRDE+
Sbjct: 13 KQEVKA-YGPNVKKGDLVYGVVHIFASFNDTFVHVTDMSGRETYVKVTGGMKVKADRDES 71
Query: 70 SPYAAMLAAQDVAEKCKTLGITALHIKLRA 99
SPYAAM+AAQDV +CK GI ALH+K+RA
Sbjct: 72 SPYAAMMAAQDVVARCKECGINALHVKMRA 101
>UniRef50_Q01E13 Cluster: 40S ribosomal protein S14; n=1;
Ostreococcus tauri|Rep: 40S ribosomal protein S14 -
Ostreococcus tauri
Length = 243
Score = 130 bits (313), Expect = 2e-29
Identities = 63/98 (64%), Positives = 71/98 (72%)
Query: 43 HVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRAXXX 102
HVTDLSG+ET++R TGGMKVKADRDE+SPYAAMLAAQDVA +CK LGITALHIK+RA
Sbjct: 90 HVTDLSGKETLSRCTGGMKVKADRDESSPYAAMLAAQDVAARCKELGITALHIKMRAKGG 149
Query: 103 XXXXXXXXXAQXXXXXXXXXXMKIGRIEDVTPVPSDST 140
Q +KIGRIEDVTP P+DST
Sbjct: 150 NKTKSPGPGGQSALRALSRSGIKIGRIEDVTPTPTDST 187
Score = 48.8 bits (111), Expect = 5e-05
Identities = 25/40 (62%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 4 RKNKVAKEEVQVT-LGPQHLVGETVFGVAHIFASFNDTFV 42
R V+ V T +GPQ GE VFGVAHIFASFNDTFV
Sbjct: 5 RHRSVSVRRVMATYVGPQAREGELVFGVAHIFASFNDTFV 44
>UniRef50_Q58NR0 Cluster: Ribosomal protein S14; n=6;
Eukaryota|Rep: Ribosomal protein S14 - Palaemonetes
pugio
Length = 77
Score = 115 bits (276), Expect = 5e-25
Identities = 55/70 (78%), Positives = 58/70 (82%)
Query: 1 MAPRKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGM 60
MAPRK K KEEVQV LGPQ GE VF V HI+AS+NDTFVHVTDLSGRETI RVTGG
Sbjct: 1 MAPRKGKTPKEEVQVQLGPQVREGENVFAVCHIYASYNDTFVHVTDLSGRETIIRVTGGQ 60
Query: 61 KVKADRDEAS 70
KVKADRDE+S
Sbjct: 61 KVKADRDESS 70
>UniRef50_P54021 Cluster: 30S ribosomal protein S11P; n=15;
Archaea|Rep: 30S ribosomal protein S11P - Methanococcus
jannaschii
Length = 129
Score = 111 bits (267), Expect = 6e-24
Identities = 54/113 (47%), Positives = 70/113 (61%)
Query: 28 FGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKT 87
+G+ HI++S+N+T +H TD++G ETIARV+GG + RDE SPYAAM AA +AE K
Sbjct: 9 WGIVHIYSSYNNTIIHATDITGAETIARVSGGRVTRNQRDEGSPYAAMQAAFKLAEVLKE 68
Query: 88 LGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRIEDVTPVPSDST 140
GI +HIK+RA AQ ++IGRIEDVTPVP D T
Sbjct: 69 RGIENIHIKVRAPGGSGQKNPGPGAQAAIRALARAGLRIGRIEDVTPVPHDGT 121
>UniRef50_A0RWI9 Cluster: 30S ribosomal protein S11P; n=2;
Thermoprotei|Rep: 30S ribosomal protein S11P -
Cenarchaeum symbiosum
Length = 198
Score = 108 bits (259), Expect = 6e-23
Identities = 50/122 (40%), Positives = 73/122 (59%)
Query: 19 PQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAA 78
P+ + G+AHI++S+N+T +H+TDL+G ET++ +GG+ V ADR E+SP+AAM AA
Sbjct: 66 PETTPADEKLGIAHIYSSYNNTIIHMTDLTGAETVSISSGGVHVNADRYESSPFAAMKAA 125
Query: 79 QDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRIEDVTPVPSD 138
V E + G T HI++RA AQ +IGRI+DVTP+P D
Sbjct: 126 NKVIESARAKGFTGFHIRVRAVGGVGSRVPGPGAQAAIRALARGGFRIGRIDDVTPIPHD 185
Query: 139 ST 140
+T
Sbjct: 186 TT 187
>UniRef50_Q3LWB9 Cluster: Ribosomal protein S14; n=1; Bigelowiella
natans|Rep: Ribosomal protein S14 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 145
Score = 107 bits (257), Expect = 1e-22
Identities = 50/114 (43%), Positives = 67/114 (58%)
Query: 27 VFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCK 86
+FG+ HI ++ NDT +HVTD++G ETI+R++ G+ +D+ S Y AMLA Q V+ CK
Sbjct: 11 LFGILHILSTKNDTIIHVTDITGSETISRISSGIVATNGKDKKSNYCAMLATQKVSNVCK 70
Query: 87 TLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRIEDVTPVPSDST 140
LGI ALHIK+RA A KIGRIED TP P++ T
Sbjct: 71 VLGINALHIKIRARGGNASHLISTGAHTVVTTLVRLGFKIGRIEDTTPTPTNGT 124
>UniRef50_A0SNY7 Cluster: 30S ribosomal protein S11; n=1; uncultured
euryarchaeote ARMAN-2|Rep: 30S ribosomal protein S11 -
uncultured euryarchaeote ARMAN-2
Length = 169
Score = 103 bits (248), Expect = 1e-21
Identities = 52/113 (46%), Positives = 70/113 (61%)
Query: 28 FGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKT 87
+ VAH+++S NDT + +TDLSG ETIA +GGM V AD E SPYAAM AA VA + K
Sbjct: 46 WAVAHVYSSKNDTIITLTDLSGSETIAVGSGGMMVNADSQEGSPYAAMQAAYKVAAEAKE 105
Query: 88 LGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRIEDVTPVPSDST 140
GIT ++I++RA AQ +++ RIEDVTP+P+D+T
Sbjct: 106 KGITNINIEIRAPGGHGSKTPGHGAQAVVRVLARSGLRVNRIEDVTPIPTDTT 158
>UniRef50_A7QYG3 Cluster: Chromosome chr17 scaffold_246, whole
genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr17 scaffold_246, whole genome shotgun
sequence - Vitis vinifera (Grape)
Length = 182
Score = 67.7 bits (158), Expect = 1e-10
Identities = 31/49 (63%), Positives = 38/49 (77%)
Query: 51 ETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRA 99
ET+ R TGGMK K D +E+SP AAM AAQDV+++CK L IT LH+KL A
Sbjct: 50 ETLVRTTGGMKEKTDGEESSPCAAMPAAQDVSQECKELDITVLHVKLHA 98
>UniRef50_A5BMD1 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 104
Score = 64.5 bits (150), Expect = 9e-10
Identities = 31/49 (63%), Positives = 38/49 (77%)
Query: 51 ETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRA 99
ET+ R TGGMK KAD +E+SP AAM AAQDV+++ K L IT LH+KL A
Sbjct: 29 ETLVRSTGGMKEKADGEESSPCAAMPAAQDVSQRFKELDITVLHVKLHA 77
>UniRef50_A4D1M5 Cluster: Similar to ribosomal protein S14; n=3;
Homo/Pan/Gorilla group|Rep: Similar to ribosomal
protein S14 - Homo sapiens (Human)
Length = 350
Score = 60.5 bits (140), Expect = 2e-08
Identities = 28/40 (70%), Positives = 33/40 (82%)
Query: 60 MKVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRA 99
MK +AD+DE+SP AML AQDV ++CK LGITALHIKL A
Sbjct: 1 MKEQADQDESSPCTAMLTAQDVVQRCKELGITALHIKLLA 40
>UniRef50_UPI0000DBF82A Cluster: UPI0000DBF82A related cluster;
n=1; Rattus norvegicus|Rep: UPI0000DBF82A UniRef100
entry - Rattus norvegicus
Length = 119
Score = 55.2 bits (127), Expect = 6e-07
Identities = 33/86 (38%), Positives = 51/86 (59%), Gaps = 4/86 (4%)
Query: 15 VTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGR-ETIARVTGGMKVKADRDEASPYA 73
++L PQ + G+ V GV +IFASF D+F++ TD+ G+ T VT MK + E +P
Sbjct: 5 LSLRPQVVEGQNVLGVCYIFASFGDSFIYGTDVYGKVNTCQYVTSRMKTQ--YAETNPCH 62
Query: 74 AMLA-AQDVAEKCKTLGITALHIKLR 98
+ A DV + K + + ALHI+L+
Sbjct: 63 RLHAGCLDVTHRFKEMSVPALHIRLQ 88
>UniRef50_P59378 Cluster: 30S ribosomal protein S11; n=48;
Bacteria|Rep: 30S ribosomal protein S11 - Streptococcus
mutans
Length = 127
Score = 52.0 bits (119), Expect = 5e-06
Identities = 30/108 (27%), Positives = 52/108 (48%), Gaps = 9/108 (8%)
Query: 29 GVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTL 88
G+AHI A+FN+T V +TD+ G G + K R +++P+AA +AA+ A+ +
Sbjct: 17 GIAHIHATFNNTIVMITDVHGNALAWSSAGALGFKGSR-KSTPFAAQMAAEAAAKSAQEH 75
Query: 89 GITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRIEDVTPVP 136
G+ + + ++ A +++ I DVTPVP
Sbjct: 76 GLKTVEVTVKGPGSGRESAIRALA--------AAGLEVTSIRDVTPVP 115
>UniRef50_A6PT07 Cluster: Ribosomal protein S11; n=1; Victivallis
vadensis ATCC BAA-548|Rep: Ribosomal protein S11 -
Victivallis vadensis ATCC BAA-548
Length = 148
Score = 51.2 bits (117), Expect = 9e-06
Identities = 32/108 (29%), Positives = 53/108 (49%), Gaps = 9/108 (8%)
Query: 29 GVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTL 88
G+A++ A+FN+T V TDL G I TGG +++ YAA + A D A+K + +
Sbjct: 38 GIAYVLATFNNTKVTFTDLHG-NVICWSTGGKNGFKGSRKSTAYAAQVIAGDAAKKAQLV 96
Query: 89 GITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRIEDVTPVP 136
G+ + ++++ A M+I I+D+TPVP
Sbjct: 97 GMKEVEVRIKGPGAGRESAVRGIA--------AAGMEISTIKDITPVP 136
>UniRef50_Q5LW33 Cluster: 30S ribosomal protein S11; n=15;
Bacteria|Rep: 30S ribosomal protein S11 - Silicibacter
pomeroyi
Length = 130
Score = 50.8 bits (116), Expect = 1e-05
Identities = 24/70 (34%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 29 GVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTL 88
GVAH+ ++FN+T + ++D+ G G M K R +++PYAA LAA+D K +
Sbjct: 20 GVAHVNSTFNNTKILISDVQGNAISWSSAGTMGFKGSR-KSTPYAAQLAAEDAGRKAQDH 78
Query: 89 GITALHIKLR 98
G+ L ++++
Sbjct: 79 GVKTLEVEVQ 88
>UniRef50_A6YE90 Cluster: Ribosomal protein S11; n=5; cellular
organisms|Rep: Ribosomal protein S11 - Chlorokybus
atmophyticus (Soil alga)
Length = 262
Score = 50.0 bits (114), Expect = 2e-05
Identities = 34/108 (31%), Positives = 50/108 (46%), Gaps = 9/108 (8%)
Query: 29 GVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTL 88
GVAHI + N+T + +TDL G +G + K R + S YAA AA+ A+K L
Sbjct: 152 GVAHIQTTLNNTIITITDLDGNTKSWSSSGSIGFKGSRRKTS-YAAQAAAETAAKKSIQL 210
Query: 89 GITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRIEDVTPVP 136
GI + +K+R +KI +I+D TP+P
Sbjct: 211 GIKDVTVKIRG--------FGPGRDSSLRGLQIGGLKIYKIQDTTPLP 250
>UniRef50_A3A282 Cluster: Putative uncharacterized protein; n=3;
Oryza sativa|Rep: Putative uncharacterized protein -
Oryza sativa subsp. japonica (Rice)
Length = 332
Score = 50.0 bits (114), Expect = 2e-05
Identities = 23/31 (74%), Positives = 26/31 (83%)
Query: 56 VTGGMKVKADRDEASPYAAMLAAQDVAEKCK 86
V GGMK+KAD DE+SPYAAML +QDVA CK
Sbjct: 211 VGGGMKIKADCDESSPYAAMLVSQDVALCCK 241
>UniRef50_Q12G79 Cluster: 30S ribosomal protein S11; n=186; cellular
organisms|Rep: 30S ribosomal protein S11 - Polaromonas
sp. (strain JS666 / ATCC BAA-500)
Length = 134
Score = 48.4 bits (110), Expect = 7e-05
Identities = 30/108 (27%), Positives = 50/108 (46%), Gaps = 9/108 (8%)
Query: 29 GVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTL 88
G+AH+ ASFN+T + +TD G +GG K R +++P+AA +A++
Sbjct: 24 GIAHVHASFNNTIITITDRQGNALSWASSGGQGFKGSR-KSTPFAAQVASEVAGRAAIEQ 82
Query: 89 GITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRIEDVTPVP 136
GI L ++++ + ++I I DVTPVP
Sbjct: 83 GIKNLDVEIKG--------PGPGRESSVRALGALGIRINSIADVTPVP 122
>UniRef50_P59375 Cluster: 30S ribosomal protein S11; n=85; cellular
organisms|Rep: 30S ribosomal protein S11 - Shewanella
oneidensis
Length = 130
Score = 48.0 bits (109), Expect = 9e-05
Identities = 31/108 (28%), Positives = 49/108 (45%), Gaps = 9/108 (8%)
Query: 29 GVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTL 88
G+AHI ASFN+T V +TD G +GG + R +++P+AA +AA+ +
Sbjct: 20 GMAHIHASFNNTIVTITDRQGNALSWATSGGSGFRGSR-KSTPFAAQVAAERAGAAAQDY 78
Query: 89 GITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRIEDVTPVP 136
G+ L + ++ + KI I DVTP+P
Sbjct: 79 GLKNLEVFVKG--------PGPGRESAIRALNAVGYKITNITDVTPIP 118
>UniRef50_Q1IS96 Cluster: 30S ribosomal protein S11; n=274; cellular
organisms|Rep: 30S ribosomal protein S11 - Acidobacteria
bacterium (strain Ellin345)
Length = 142
Score = 46.4 bits (105), Expect = 3e-04
Identities = 30/108 (27%), Positives = 50/108 (46%), Gaps = 9/108 (8%)
Query: 29 GVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTL 88
G+AHI ASFN+T V ++D SG + +G + + R + +P+AA AA A +
Sbjct: 32 GLAHIQASFNNTIVTISDPSGNVVSWKSSGSLGFRGSR-KGTPFAAQQAAMTAANMARDH 90
Query: 89 GITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRIEDVTPVP 136
G+ +L +++ A + + I DVTP+P
Sbjct: 91 GMRSLDVRVAGPGSGRESAVRALA--------AAGLDVRVIRDVTPIP 130
>UniRef50_P04969 Cluster: 30S ribosomal protein S11; n=155; cellular
organisms|Rep: 30S ribosomal protein S11 - Bacillus
subtilis
Length = 131
Score = 45.6 bits (103), Expect = 5e-04
Identities = 28/108 (25%), Positives = 50/108 (46%), Gaps = 9/108 (8%)
Query: 29 GVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTL 88
G+AHI ++FN+T V +TD G G + + R +++P+AA +AA+ A+
Sbjct: 21 GIAHIRSTFNNTIVTITDTHGNAISWSSAGALGFRGSR-KSTPFAAQMAAETAAKGSIEH 79
Query: 89 GITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRIEDVTPVP 136
G+ L + ++ + +++ I DVTPVP
Sbjct: 80 GLKTLEVTVKG--------PGSGREAAIRALQAAGLEVTAIRDVTPVP 119
>UniRef50_Q98Q07 Cluster: 30S ribosomal protein S11; n=33;
Bacteria|Rep: 30S ribosomal protein S11 - Mycoplasma
pulmonis
Length = 136
Score = 42.3 bits (95), Expect = 0.004
Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 29 GVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTL 88
GVAHI ++ N+T V +D G +G + K + + + YAA LAAQ+ +EK K
Sbjct: 21 GVAHIHSTHNNTIVTFSDEKGNVISWASSGTIGYKGTKKKTA-YAAGLAAQNASEKAKEH 79
Query: 89 GITALHIKLR 98
GI + ++++
Sbjct: 80 GIREVSVRVK 89
>UniRef50_A0NHE9 Cluster: Ribosomal protein S11; n=1; Oenococcus
oeni ATCC BAA-1163|Rep: Ribosomal protein S11 -
Oenococcus oeni ATCC BAA-1163
Length = 113
Score = 41.9 bits (94), Expect = 0.006
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 29 GVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTL 88
GVAHI ++FN+T V +TD +G G + K R +++P+AA LA + A+
Sbjct: 22 GVAHIHSTFNNTIVLITDEAGNAVSWSSAGSLGFKGSR-KSTPFAAQLAGEAAAKAAMEQ 80
Query: 89 GITALHIKLR 98
+ ++ I ++
Sbjct: 81 NMHSVAISVK 90
>UniRef50_Q6ASY6 Cluster: Small subunit ribosomal protein, putative;
n=19; Spermatophyta|Rep: Small subunit ribosomal
protein, putative - Oryza sativa subsp. japonica (Rice)
Length = 366
Score = 40.3 bits (90), Expect = 0.017
Identities = 19/67 (28%), Positives = 34/67 (50%)
Query: 32 HIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGIT 91
H+ N TFV VTD+ G + G ++ + R S YAA A+ V + +G+
Sbjct: 248 HVLLKRNKTFVTVTDVRGNKKTGASAGCLEDRKGRSRLSKYAAEATAEHVGRAARKMGLK 307
Query: 92 ALHIKLR 98
++ +K++
Sbjct: 308 SVVMKVK 314
>UniRef50_Q0P3I7 Cluster: Rps11; n=1; Ostreococcus tauri|Rep:
Rps11 - Ostreococcus tauri
Length = 121
Score = 40.3 bits (90), Expect = 0.017
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 33 IFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGITA 92
I + N+TFV++TDL G +G + K + ++S YAA + V + C I
Sbjct: 15 ISTTLNNTFVNLTDLEGNTLCCVSSGSLGFKGSK-KSSSYAAQSTTEKVLQFCAQQSIEK 73
Query: 93 LHIKLR 98
L IKLR
Sbjct: 74 LMIKLR 79
>UniRef50_Q2GEB7 Cluster: 30S ribosomal protein S11; n=1;
Neorickettsia sennetsu str. Miyayama|Rep: 30S ribosomal
protein S11 - Neorickettsia sennetsu (strain Miyayama)
Length = 120
Score = 39.9 bits (89), Expect = 0.023
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 27 VFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCK 86
V G AH+ +FN+ ++ VTD G +G + K ++ +++ YAA A + K K
Sbjct: 8 VSGNAHVIVTFNNVYISVTDHQGNVQGWASSGSVGFKGNK-KSTAYAAQSVATTLMTKLK 66
Query: 87 TLGITALHIKL 97
+G+ L++ L
Sbjct: 67 RIGLKILNVHL 77
>UniRef50_Q4S8D4 Cluster: Chromosome undetermined SCAF14706, whole
genome shotgun sequence; n=3; cellular organisms|Rep:
Chromosome undetermined SCAF14706, whole genome shotgun
sequence - Tetraodon nigroviridis (Green puffer)
Length = 215
Score = 39.5 bits (88), Expect = 0.030
Identities = 19/69 (27%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 30 VAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLG 89
+AH+ A++N+T + VTD +G+ ++ R + G + + +++P AA A A K G
Sbjct: 106 IAHVKATYNNTHIQVTDSAGK-SMVRTSCGTEGFKNIKKSTPIAAQTAGISAAAKATAKG 164
Query: 90 ITALHIKLR 98
+T + + ++
Sbjct: 165 VTFVRVVVK 173
>UniRef50_Q9TCB8 Cluster: Ribosomal protein S11; n=1; Nephroselmis
olivacea|Rep: Ribosomal protein S11 - Nephroselmis
olivacea
Length = 128
Score = 39.1 bits (87), Expect = 0.040
Identities = 27/110 (24%), Positives = 51/110 (46%), Gaps = 9/110 (8%)
Query: 27 VFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCK 86
+ G+ ++ ++ N+T + +TD G G + K R A+ +AA AA+ +A+K
Sbjct: 16 LLGIIYVQSTKNNTILTLTDSVGAAKAWSSAGSVGFKGAR-RATGFAAQTAAETLAKKSS 74
Query: 87 TLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRIEDVTPVP 136
LG + +KL+ + +KI +I+D+TP+P
Sbjct: 75 RLGFFHIDVKLKG--------LGNGRRSSLRGLKLGGLKIRKIQDITPLP 116
>UniRef50_P47422 Cluster: 30S ribosomal protein S11; n=4;
Mycoplasma|Rep: 30S ribosomal protein S11 - Mycoplasma
genitalium
Length = 131
Score = 38.7 bits (86), Expect = 0.053
Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 29 GVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTL 88
G+ H+ S N+T V TD SG +G + K R + +PY+A +AA VA+ K +
Sbjct: 12 GLIHVSCSPNNTIVSATDPSGNVLCWASSGTVGFKGFR-KKTPYSAGVAADKVAKTVKEM 70
Query: 89 GITALHIKLR 98
G+ ++ + L+
Sbjct: 71 GMGSVKMYLK 80
>UniRef50_Q7YDI4 Cluster: Small subunit ribosomal protein; n=29;
Magnoliophyta|Rep: Small subunit ribosomal protein -
Berberis thunbergii (Japanese barberry)
Length = 150
Score = 38.3 bits (85), Expect = 0.070
Identities = 19/69 (27%), Positives = 33/69 (47%)
Query: 30 VAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLG 89
+ H+ N+TFV VTD G + G ++ S YAA A+ V + LG
Sbjct: 46 LVHLLPLHNNTFVTVTDARGNKKTGASAGSLEEFKGGSRLSRYAAKATAEHVGRSARNLG 105
Query: 90 ITALHIKLR 98
+ ++ +K++
Sbjct: 106 MKSVVMKVK 114
>UniRef50_P56802 Cluster: Chloroplast 30S ribosomal protein S11;
n=85; Tracheophyta|Rep: Chloroplast 30S ribosomal
protein S11 - Arabidopsis thaliana (Mouse-ear cress)
Length = 138
Score = 38.3 bits (85), Expect = 0.070
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 29 GVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTL 88
GV H+ ASFN+T V VTD+ GR G + R +P+AA AA +
Sbjct: 28 GVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFRGTR-RGTPFAAQTAAGNAIRAVVDQ 86
Query: 89 GITALHIKLR 98
G+ ++++
Sbjct: 87 GMQRAEVRIK 96
>UniRef50_Q9PQN5 Cluster: 30S ribosomal protein S11; n=1; Ureaplasma
parvum|Rep: 30S ribosomal protein S11 - Ureaplasma
parvum (Ureaplasma urealyticum biotype 1)
Length = 121
Score = 37.1 bits (82), Expect = 0.16
Identities = 23/108 (21%), Positives = 50/108 (46%), Gaps = 9/108 (8%)
Query: 29 GVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTL 88
G+A+I A+ N+T + + D G +G + K + + +PY+A +AA+ A+ +
Sbjct: 12 GIAYIHATKNNTIITLADEQGSVLSWASSGSIGYKGTK-KKTPYSAGIAAEAAAKAVIDM 70
Query: 89 GITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRIEDVTPVP 136
G+ ++ + + +++ +I+DVTP+P
Sbjct: 71 GLKSVEVHVNG--------TGASRDTAIRSLQAAGLEVTKIKDVTPIP 110
>UniRef50_P46746 Cluster: Mitochondrial ribosomal protein S11;
n=1; Prototheca wickerhamii|Rep: Mitochondrial
ribosomal protein S11 - Prototheca wickerhamii
Length = 128
Score = 36.3 bits (80), Expect = 0.28
Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 29 GVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTL 88
G+ HI ++ N+T + +TDL G G + K R +++ YA+ AA+ +A K
Sbjct: 18 GIVHIQSTTNNTLITLTDLEGNTQFFVSAGTLGFKNSR-KSTVYASGAAAEALASKAFNE 76
Query: 89 GITALHIKLR 98
G + +K++
Sbjct: 77 GYRTIIVKIK 86
>UniRef50_Q9C6S3 Cluster: 30S ribosomal protein S11, putative; n=2;
Arabidopsis thaliana|Rep: 30S ribosomal protein S11,
putative - Arabidopsis thaliana (Mouse-ear cress)
Length = 235
Score = 35.9 bits (79), Expect = 0.37
Identities = 19/73 (26%), Positives = 35/73 (47%)
Query: 25 ETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEK 84
ET + HI N+TFV VTD G +G + + + Y A A+++ +
Sbjct: 111 ETNADIIHIKMLRNNTFVTVTDSKGNVKCKATSGSLPDLKGGRKMTNYTADATAENIGRR 170
Query: 85 CKTLGITALHIKL 97
K +G+ ++ +K+
Sbjct: 171 AKAMGLKSVVVKV 183
>UniRef50_P30059 Cluster: Plastid 30S ribosomal protein S11; n=4;
Streptophyta|Rep: Plastid 30S ribosomal protein S11 -
Epifagus virginiana (Beechdrops)
Length = 136
Score = 35.5 bits (78), Expect = 0.49
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 29 GVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAA 78
GV H+ SFN+T V VTD+ GR G K R + +AA +AA
Sbjct: 28 GVIHVQTSFNNTIVAVTDIKGRVVSWSSAGTCGFKGTR-RGTSFAAQIAA 76
>UniRef50_UPI0000586F02 Cluster: PREDICTED: hypothetical protein
isoform 1; n=1; Strongylocentrotus purpuratus|Rep:
PREDICTED: hypothetical protein isoform 1 -
Strongylocentrotus purpuratus
Length = 261
Score = 33.9 bits (74), Expect = 1.5
Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 30 VAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLG 89
+ +I A++N+T V V + +GR T+AR + G + + + + AA AA A K G
Sbjct: 152 IVNIKATYNNTHVSVAEHTGR-TVARTSCGTEGFKNAKKGTAIAAQTAAIAAATKAVDKG 210
Query: 90 ITALHIKLR 98
+ A+ + ++
Sbjct: 211 MNAVRVVIK 219
>UniRef50_Q9TLV1 Cluster: Chloroplast 30S ribosomal protein S11;
n=10; cellular organisms|Rep: Chloroplast 30S ribosomal
protein S11 - Cyanidium caldarium
Length = 129
Score = 33.9 bits (74), Expect = 1.5
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 29 GVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTL 88
G+ I ++FN+T V TD G+ IA +GG + + +P+AA A + + +
Sbjct: 19 GLIIINSTFNNTIVTATDCYGK-VIAWASGGTEGFKGAKKGTPFAAQSATEKLIKALLEQ 77
Query: 89 GITALHIKL 97
G +HI +
Sbjct: 78 GTQRIHISV 86
>UniRef50_Q8W9P7 Cluster: Ribosomal protein S11; n=1; Mesostigma
viride|Rep: Ribosomal protein S11 - Mesostigma viride
Length = 128
Score = 33.1 bits (72), Expect = 2.6
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 29 GVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTL 88
G+ H+ + N+T + +TD G TI + GM + + +A+ AQ + +CK L
Sbjct: 18 GILHVQTTLNNTIMTLTDRKG-NTIFGFSSGMLGFGGSRKKTRFASRSVAQHMVLRCKQL 76
Query: 89 GITALHIKLR 98
I L + ++
Sbjct: 77 RIQRLILAIK 86
>UniRef50_Q49081 Cluster: 30S ribosomal protein; n=1; Mycoplasma
capricolum|Rep: 30S ribosomal protein - Mycoplasma
capricolum
Length = 80
Score = 32.3 bits (70), Expect = 4.6
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 29 GVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYA 73
G+AHI ++FN+T V V+D G G + K + +++PYA
Sbjct: 11 GIAHIHSTFNNTIVTVSDEKGNVLSWSSAGAIGFKGSK-KSTPYA 54
>UniRef50_A3CMD3 Cluster: Phenylalanyl-tRNA synthetase beta chain,
putative; n=2; Streptococcus|Rep: Phenylalanyl-tRNA
synthetase beta chain, putative - Streptococcus
sanguinis (strain SK36)
Length = 801
Score = 31.9 bits (69), Expect = 6.1
Identities = 18/66 (27%), Positives = 32/66 (48%)
Query: 11 EEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEAS 70
E +++++ P ++ GVAH A+ D VH D S E + + V + ++A
Sbjct: 161 EIIELSITPNRADALSMRGVAHEVAAIYDKSVHFKDFSLVENQKQAAESLSVALETEKAP 220
Query: 71 PYAAML 76
YAA +
Sbjct: 221 YYAARI 226
>UniRef50_P25370 Cluster: Good for full DBP5 activity protein 2;
n=2; Saccharomyces cerevisiae|Rep: Good for full DBP5
activity protein 2 - Saccharomyces cerevisiae (Baker's
yeast)
Length = 566
Score = 31.9 bits (69), Expect = 6.1
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 21 HLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASP 71
H G + H+F F D V+ +SG + + +V G +KV +RD P
Sbjct: 461 HNAGNDAYYTLHLFMKFCD--VNFRKISGMDDVLKVMGQVKVWGERDVREP 509
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.131 0.365
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,723,275
Number of Sequences: 1657284
Number of extensions: 3342550
Number of successful extensions: 7174
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 7135
Number of HSP's gapped (non-prelim): 44
length of query: 151
length of database: 575,637,011
effective HSP length: 94
effective length of query: 57
effective length of database: 419,852,315
effective search space: 23931581955
effective search space used: 23931581955
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 68 (31.5 bits)
- SilkBase 1999-2023 -