GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002405-TA|BGIBMGA002405-PA|IPR001971|Ribosomal protein
S11
         (151 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H5.05c |rps1401|rps14-1, rps14|40S ribosomal protein S14|Sc...   174   6e-45
SPBC18H10.13 |rps1402|rps14-2|40S ribosomal protein S14|Schizosa...   174   6e-45
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch...    28   0.70 
SPBC3B9.08c |||Mago-nashi homolog|Schizosaccharomyces pombe|chr ...    24   8.6  

>SPAC3H5.05c |rps1401|rps14-1, rps14|40S ribosomal protein
           S14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 139

 Score =  174 bits (423), Expect = 6e-45
 Identities = 83/124 (66%), Positives = 93/124 (75%)

Query: 17  LGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAML 76
           +GPQ   GE VFGVAHIFASFNDTFVH+TDL+G+ETI RVTGGMKVK DRDE+SPYAAML
Sbjct: 5   VGPQIRSGELVFGVAHIFASFNDTFVHITDLTGKETIVRVTGGMKVKTDRDESSPYAAML 64

Query: 77  AAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRIEDVTPVP 136
           AAQD A KCK +GITALHIK+RA            AQ          M+IGRIEDVTP+P
Sbjct: 65  AAQDAAAKCKEVGITALHIKIRATGGTATKTPGPGAQAALRALARAGMRIGRIEDVTPIP 124

Query: 137 SDST 140
           +DST
Sbjct: 125 TDST 128


>SPBC18H10.13 |rps1402|rps14-2|40S ribosomal protein
           S14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 139

 Score =  174 bits (423), Expect = 6e-45
 Identities = 83/124 (66%), Positives = 93/124 (75%)

Query: 17  LGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAML 76
           +GPQ   GE VFGVAHIFASFNDTFVH+TDL+G+ETI RVTGGMKVK DRDE+SPYAAML
Sbjct: 5   VGPQIRSGELVFGVAHIFASFNDTFVHITDLTGKETIVRVTGGMKVKTDRDESSPYAAML 64

Query: 77  AAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRIEDVTPVP 136
           AAQD A KCK +GITALHIK+RA            AQ          M+IGRIEDVTP+P
Sbjct: 65  AAQDAAAKCKEVGITALHIKIRATGGTATKTPGPGAQAALRALARAGMRIGRIEDVTPIP 124

Query: 137 SDST 140
           +DST
Sbjct: 125 TDST 128


>SPCC417.08 |tef3||translation elongation factor
           eEF3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1047

 Score = 27.9 bits (59), Expect = 0.70
 Identities = 14/34 (41%), Positives = 20/34 (58%)

Query: 51  ETIARVTGGMKVKADRDEASPYAAMLAAQDVAEK 84
           ET+  V G +KV  + +  + Y A +AAQ V EK
Sbjct: 347 ETLKAVLGEIKVPTNEEVIAKYVANIAAQLVEEK 380


>SPBC3B9.08c |||Mago-nashi homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 147

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 8/24 (33%), Positives = 17/24 (70%)

Query: 3   PRKNKVAKEEVQVTLGPQHLVGET 26
           P +NK  K+E+++ +  +H++ ET
Sbjct: 77  PPENKDGKQELEIRMNGKHIMFET 100


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.131    0.365 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 445,721
Number of Sequences: 5004
Number of extensions: 12236
Number of successful extensions: 28
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 24
Number of HSP's gapped (non-prelim): 4
length of query: 151
length of database: 2,362,478
effective HSP length: 67
effective length of query: 84
effective length of database: 2,027,210
effective search space: 170285640
effective search space used: 170285640
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 50 (24.2 bits)