GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002405-TA|BGIBMGA002405-PA|IPR001971|Ribosomal protein
S11
         (151 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0871 - 20441689-20441756,20442220-20442349,20442422-204425...   186   7e-48
02_04_0100 - 19730137-19730237,19731215-19731344,19731419-197315...   174   2e-44
02_01_0469 - 3359156-3359500,3359595-3359680,3359766-3359811,335...   167   3e-42
02_01_0045 + 307058-307552,308670-308716,308779-308866,309664-30...    50   8e-07
12_01_0916 + 8959866-8959958,8960429-8960583,8960676-8961055,896...    28   3.7  
12_01_0418 - 3304741-3304904,3305579-3305762,3307254-3307347,330...    27   6.4  

>04_03_0871 -
           20441689-20441756,20442220-20442349,20442422-20442507,
           20444271-20444316,20444425-20444547,20445302-20445370
          Length = 173

 Score =  186 bits (453), Expect = 7e-48
 Identities = 93/137 (67%), Positives = 103/137 (75%), Gaps = 1/137 (0%)

Query: 4   RKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVK 63
           +K +  KEE  VTLGP    GE VFGVAHIFASFNDTF+HVTDLSGRET+ R+TGGMKVK
Sbjct: 27  KKTREPKEE-NVTLGPTVREGEYVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVK 85

Query: 64  ADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXX 123
           ADRDE+SPYAAMLA+QDVA++CK LGITALHIKLRA            AQ          
Sbjct: 86  ADRDESSPYAAMLASQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSG 145

Query: 124 MKIGRIEDVTPVPSDST 140
           MKIGRIEDVTPVP+DST
Sbjct: 146 MKIGRIEDVTPVPTDST 162


>02_04_0100 -
           19730137-19730237,19731215-19731344,19731419-19731504,
           19732410-19732455,19732558-19732680,19732779-19732781
          Length = 162

 Score =  174 bits (424), Expect = 2e-44
 Identities = 93/151 (61%), Positives = 103/151 (68%), Gaps = 11/151 (7%)

Query: 1   MAPRKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGM 60
           M+ RK     +E  VTLGP    GE VFGVAHIFASFNDTF+HVTDLSGRET+ R+TGGM
Sbjct: 1   MSGRKKTREPKEENVTLGPTVREGEYVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGM 60

Query: 61  KVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXX 120
           KVKADRDE+SPYAAMLA+QDVA++CK LGITALHIKLRA            AQ       
Sbjct: 61  KVKADRDESSPYAAMLASQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALA 120

Query: 121 XXXMKIGRI-----------EDVTPVPSDST 140
              MKIGRI           EDVTPVP+DST
Sbjct: 121 RSGMKIGRIADDVLSIFCHTEDVTPVPTDST 151


>02_01_0469 -
           3359156-3359500,3359595-3359680,3359766-3359811,
           3359897-3360016,3360622-3360624
          Length = 199

 Score =  167 bits (407), Expect = 3e-42
 Identities = 85/129 (65%), Positives = 94/129 (72%), Gaps = 1/129 (0%)

Query: 1   MAPRKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGM 60
           M+ RK +  KEE  VTLGP    GE VFGVAHIFASFNDTF+HVTDLSGRET+ R+TGGM
Sbjct: 1   MSKRKTREPKEE-NVTLGPTVREGEYVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGM 59

Query: 61  KVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXX 120
           KVKADRDE+SPYAAMLA+QDVA++CK LGITALHIKLRA            AQ       
Sbjct: 60  KVKADRDESSPYAAMLASQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALA 119

Query: 121 XXXMKIGRI 129
              MKIGRI
Sbjct: 120 RSGMKIGRI 128


>02_01_0045 +
           307058-307552,308670-308716,308779-308866,309664-309756,
           309788-309950,310554-310627,310889-310927
          Length = 332

 Score = 50.0 bits (114), Expect = 8e-07
 Identities = 23/31 (74%), Positives = 26/31 (83%)

Query: 56  VTGGMKVKADRDEASPYAAMLAAQDVAEKCK 86
           V GGMK+KAD DE+SPYAAML +QDVA  CK
Sbjct: 211 VGGGMKIKADCDESSPYAAMLVSQDVALCCK 241



 Score = 29.5 bits (63), Expect = 1.2
 Identities = 11/27 (40%), Positives = 18/27 (66%)

Query: 56  VTGGMKVKADRDEASPYAAMLAAQDVA 82
           V GGM +K+D DE SP+ + +   D++
Sbjct: 166 VGGGMNIKSDCDEPSPHCSCVGQTDIS 192


>12_01_0916 +
           8959866-8959958,8960429-8960583,8960676-8961055,
           8961142-8962122,8962699-8962829
          Length = 579

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 4/48 (8%)

Query: 19  PQHLVGETVFGVAHIFASFNDTF----VHVTDLSGRETIARVTGGMKV 62
           P HL G   F +A  F ++N+T      ++ D   R T+A  TGG  V
Sbjct: 481 PMHLHGFNFFVLAQGFGNYNETTDPAKFNLVDPQERNTVAVPTGGWAV 528


>12_01_0418 -
           3304741-3304904,3305579-3305762,3307254-3307347,
           3308530-3308882,3309140-3309274,3309354-3309392,
           3309587-3309652,3309739-3309834,3310291-3310527,
           3310602-3310722,3310854-3310889,3313062-3313159,
           3313298-3313591,3313842-3313904,3314280-3314438,
           3314557-3314655
          Length = 745

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 10/27 (37%), Positives = 18/27 (66%)

Query: 31  AHIFASFNDTFVHVTDLSGRETIARVT 57
           +H+++   D  V++TDLS RE++   T
Sbjct: 280 SHVYSGGRDQSVYLTDLSNRESVLLCT 306


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.131    0.365 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,045,997
Number of Sequences: 37544
Number of extensions: 89579
Number of successful extensions: 197
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 189
Number of HSP's gapped (non-prelim): 8
length of query: 151
length of database: 14,793,348
effective HSP length: 76
effective length of query: 75
effective length of database: 11,940,004
effective search space: 895500300
effective search space used: 895500300
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 56 (26.6 bits)