Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002405-TA|BGIBMGA002405-PA|IPR001971|Ribosomal protein
S11
(151 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37595| Best HMM Match : Ribosomal_S11 (HMM E-Value=0) 157 4e-39
SB_18434| Best HMM Match : DUF646 (HMM E-Value=4.8) 30 0.71
SB_15000| Best HMM Match : CRA_rpt (HMM E-Value=4) 29 1.2
SB_8656| Best HMM Match : Chorion_3 (HMM E-Value=2.4) 29 1.2
SB_56400| Best HMM Match : MTS (HMM E-Value=0.44) 29 2.2
SB_46402| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.9
SB_32247| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.9
SB_1806| Best HMM Match : ABC_tran (HMM E-Value=3.1e-06) 27 5.0
SB_55326| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
SB_31475| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
>SB_37595| Best HMM Match : Ribosomal_S11 (HMM E-Value=0)
Length = 543
Score = 157 bits (381), Expect = 4e-39
Identities = 81/114 (71%), Positives = 86/114 (75%), Gaps = 1/114 (0%)
Query: 17 LGPQHL-VGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAM 75
LG +H+ GE VFGVAHIFASFNDTFVHVTDLSGRETI+RVTGGMKVKADRDEASPYAAM
Sbjct: 187 LGWRHVGEGELVFGVAHIFASFNDTFVHVTDLSGRETISRVTGGMKVKADRDEASPYAAM 246
Query: 76 LAAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRI 129
LAAQDVA +CK +GITALHIKLRA AQ MKIGRI
Sbjct: 247 LAAQDVAARCKEIGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRI 300
>SB_18434| Best HMM Match : DUF646 (HMM E-Value=4.8)
Length = 178
Score = 30.3 bits (65), Expect = 0.71
Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Query: 6 NKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLS-GRETIARVTGGMKVKA 64
NK+ K +TLG + ET AH A + HVTD RE ++ + KV A
Sbjct: 65 NKLQKATDTMTLGANAINTETKPVGAHNMAGGHARVQHVTDPGIDREVRSKASAPAKVHA 124
Query: 65 DRDEASPYAAMLAAQDV 81
+ +P M AA V
Sbjct: 125 EGAAPAPSPRMHAAHSV 141
>SB_15000| Best HMM Match : CRA_rpt (HMM E-Value=4)
Length = 433
Score = 29.5 bits (63), Expect = 1.2
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Query: 6 NKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTD-LSGRETIARVTGGMKVKA 64
NK+ K +TLG + ET AH A N HVT+ GRE ++ KV A
Sbjct: 329 NKLQKATDSMTLGANAISTETKPVGAHNMAGGNPRVQHVTNPRIGREVRSKAFAPAKVYA 388
Query: 65 DRDEASPYAAM 75
+ +P + M
Sbjct: 389 EGAAPAPSSRM 399
>SB_8656| Best HMM Match : Chorion_3 (HMM E-Value=2.4)
Length = 352
Score = 29.5 bits (63), Expect = 1.2
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Query: 6 NKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLS-GRETIARVTGGMKVKA 64
NK+ K +TLG + ET AH A + HVTD RE ++ + KV A
Sbjct: 239 NKLQKATDTMTLGANAINTETKPVGAHNMAGGHPRVQHVTDPGIDREVRSKASAPAKVHA 298
Query: 65 DRDEASPYAAMLAAQDV 81
+ +P M AA +
Sbjct: 299 EGAAPAPSPRMHAAHSM 315
>SB_56400| Best HMM Match : MTS (HMM E-Value=0.44)
Length = 230
Score = 28.7 bits (61), Expect = 2.2
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 30 VAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRD 67
+ +I +FND + DLSG+ETI ++ K++ +RD
Sbjct: 154 IIYIEDTFNDLLRTLRDLSGKETIVLIS--CKIRYERD 189
>SB_46402| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 947
Score = 28.7 bits (61), Expect = 2.2
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Query: 6 NKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTD-LSGRETIARVTGGMKVKA 64
NK+ K +TLG + ET AH A + HVTD RE ++ KV A
Sbjct: 349 NKLQKATDSMTLGANAINTETKPLGAHNMAGGHPRVQHVTDPRIDREVRSKAFAPAKVHA 408
Query: 65 DRDEASPYAAMLAAQDV 81
+ +P + M AA +
Sbjct: 409 EGAAPAPSSRMHAAHSM 425
>SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4529
Score = 28.3 bits (60), Expect = 2.9
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 6 NKVAKEEVQVTLGPQHLVGETVFGVAHIF 34
+K+ KE V V L P ++ GE +FG+ F
Sbjct: 4464 HKLRKEAVLVNLWPAYITGEDLFGLTEQF 4492
>SB_32247| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2209
Score = 28.3 bits (60), Expect = 2.9
Identities = 21/74 (28%), Positives = 33/74 (44%)
Query: 6 NKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKAD 65
NK+ K +TLG + ET AH A + HVTD ++ + KV A+
Sbjct: 368 NKLQKATNSMTLGANAINTETKPVGAHNMAGGHPRVQHVTDRVPSRRQSKDSAPAKVHAE 427
Query: 66 RDEASPYAAMLAAQ 79
A+P A ++ +
Sbjct: 428 GAAAAPAAHSMSGE 441
>SB_1806| Best HMM Match : ABC_tran (HMM E-Value=3.1e-06)
Length = 141
Score = 27.5 bits (58), Expect = 5.0
Identities = 17/46 (36%), Positives = 23/46 (50%)
Query: 50 RETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGITALHI 95
R AR+ V A DEA+ + QD+ KCK LG+T + I
Sbjct: 63 RLAFARLFYHHPVIAMLDEATSALDVRTEQDLYRKCKQLGMTLISI 108
>SB_55326| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1289
Score = 26.6 bits (56), Expect = 8.8
Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
Query: 6 NKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLS-GRETIARVTGGMKVKA 64
NK K +TLG + ET AH A + HVTD RE ++ + +V A
Sbjct: 65 NKQQKATDSMTLGANAINTETKPVGAHNMAVGHPRVQHVTDPGIDREVRSKASATARVHA 124
Query: 65 DRDEASPYAAMLAAQDV 81
+ +P M AA +
Sbjct: 125 EGAAPAPSPLMHAAHSM 141
>SB_31475| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 175
Score = 26.6 bits (56), Expect = 8.8
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Query: 6 NKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTD-LSGRETIARVTGGMKVKA 64
NK+ K +TLG + ET AH A + HVTD RE ++ KV A
Sbjct: 65 NKLQKATDSMTLGANAINTETKPVGAHNMAGGHPRVQHVTDPRIDREVRSKAFAPAKVHA 124
Query: 65 DRDEASPYAAM 75
+ +P + M
Sbjct: 125 EGAAPAPSSRM 135
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.131 0.365
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,368,922
Number of Sequences: 59808
Number of extensions: 93951
Number of successful extensions: 222
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 217
Number of HSP's gapped (non-prelim): 11
length of query: 151
length of database: 16,821,457
effective HSP length: 76
effective length of query: 75
effective length of database: 12,276,049
effective search space: 920703675
effective search space used: 920703675
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 56 (26.6 bits)
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