GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002405-TA|BGIBMGA002405-PA|IPR001971|Ribosomal protein
S11
         (151 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00033-5|AAC48301.1|  152|Caenorhabditis elegans Ribosomal prote...   192   9e-50
AF024501-7|AAN65319.1|  304|Caenorhabditis elegans Hypothetical ...    28   3.3  
Z49911-5|CAA90128.1|  431|Caenorhabditis elegans Hypothetical pr...    27   4.3  

>U00033-5|AAC48301.1|  152|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 14 protein.
          Length = 152

 Score =  192 bits (468), Expect = 9e-50
 Identities = 95/141 (67%), Positives = 105/141 (74%), Gaps = 1/141 (0%)

Query: 1   MAP-RKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGG 59
           MAP RK K  +E+  V+LGPQ   GE +FGVAHIFASFNDTFVH+TD+SGRETI RVTGG
Sbjct: 1   MAPARKGKAKEEQAVVSLGPQAKEGELIFGVAHIFASFNDTFVHITDISGRETIVRVTGG 60

Query: 60  MKVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXX 119
           MKVKADRDE+SPYAAMLAAQDVA++CK LGI ALHIKLRA            AQ      
Sbjct: 61  MKVKADRDESSPYAAMLAAQDVADRCKQLGINALHIKLRATGGTRTKTPGPGAQSALRAL 120

Query: 120 XXXXMKIGRIEDVTPVPSDST 140
               MKIGRIEDVTP+PSD T
Sbjct: 121 ARAGMKIGRIEDVTPIPSDCT 141


>AF024501-7|AAN65319.1|  304|Caenorhabditis elegans Hypothetical
           protein F39E9.2 protein.
          Length = 304

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 11/43 (25%), Positives = 23/43 (53%)

Query: 46  DLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTL 88
           D +G E I ++ G + VK  ++++  +  +     + E C+TL
Sbjct: 62  DEAGNEDIDKIAGAIDVKFGQNQSQNFTTVRTLVSLTEPCQTL 104


>Z49911-5|CAA90128.1|  431|Caenorhabditis elegans Hypothetical
           protein M28.6 protein.
          Length = 431

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 4/43 (9%)

Query: 19  PQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMK 61
           P H  G T FG  H   + +   + +TDL  R TIA VT G+K
Sbjct: 365 PIHRAG-TQFGFGH---TGHGCQMVITDLKNRVTIAYVTNGLK 403


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.318    0.131    0.365 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,475,698
Number of Sequences: 27539
Number of extensions: 69924
Number of successful extensions: 128
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 126
Number of HSP's gapped (non-prelim): 3
length of query: 151
length of database: 12,573,161
effective HSP length: 75
effective length of query: 76
effective length of database: 10,507,736
effective search space: 798587936
effective search space used: 798587936
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 56 (26.6 bits)