GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002405-TA|BGIBMGA002405-PA|IPR001971|Ribosomal protein
S11
         (151 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              21   4.1  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    21   4.1  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    21   7.2  

>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 10/28 (35%), Positives = 15/28 (53%)

Query: 26 TVFGVAHIFASFNDTFVHVTDLSGRETI 53
          ++F +  IF   N+T   VTD    ET+
Sbjct: 12 SIFLILIIFIYSNETIAQVTDDENCETL 39


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
          protein precursor protein.
          Length = 145

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 10/28 (35%), Positives = 15/28 (53%)

Query: 26 TVFGVAHIFASFNDTFVHVTDLSGRETI 53
          ++F +  IF   N+T   VTD    ET+
Sbjct: 12 SIFLILIIFIYSNETIAQVTDDENCETL 39


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
          protein.
          Length = 430

 Score = 20.6 bits (41), Expect = 7.2
 Identities = 11/31 (35%), Positives = 15/31 (48%)

Query: 67 DEASPYAAMLAAQDVAEKCKTLGITALHIKL 97
          DEAS   AM+  + + E    +GI     KL
Sbjct: 49 DEASKTMAMMKGEYIPENALPVGIEIWRNKL 79


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.131    0.365 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,425
Number of Sequences: 429
Number of extensions: 750
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 151
length of database: 140,377
effective HSP length: 53
effective length of query: 98
effective length of database: 117,640
effective search space: 11528720
effective search space used: 11528720
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.3 bits)
S2: 40 (20.2 bits)