GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002403-TA|BGIBMGA002403-PA|undefined
         (110 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    23   0.94 
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    23   0.94 
AY052625-1|AAL15473.1|  135|Tribolium castaneum tryptophan oxyge...    21   2.9  
AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan oxyge...    21   2.9  
AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan oxyge...    21   2.9  
DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11 pro...    20   5.0  
AY769607-1|AAV40983.1|  196|Tribolium castaneum heat shock cogna...    20   5.0  
AY769606-1|AAV40982.1|  196|Tribolium castaneum heat shock prote...    20   5.0  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    20   6.6  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    20   6.6  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    20   6.6  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    20   6.6  
DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc gr...    19   8.7  

>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
          transcription factor Maxillopediaprotein.
          Length = 523

 Score = 22.6 bits (46), Expect = 0.94
 Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 2/23 (8%)

Query: 40 LPRRMRTQQENIQKTLQEMQRRF 62
          LPRR+RT   N Q  L E+++ F
Sbjct: 3  LPRRLRTAYTNTQ--LLELEKEF 23


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 22.6 bits (46), Expect = 0.94
 Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 2/23 (8%)

Query: 40  LPRRMRTQQENIQKTLQEMQRRF 62
           LPRR+RT   N Q  L E+++ F
Sbjct: 134 LPRRLRTAYTNTQ--LLELEKEF 154


>AY052625-1|AAL15473.1|  135|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 2.9
 Identities = 12/42 (28%), Positives = 20/42 (47%)

Query: 37  FFMLPRRMRTQQENIQKTLQEMQRRFPDLNITEEDLKNAEKE 78
           F +L  ++  +QEN  K  Q   + F +     E +  +EKE
Sbjct: 78  FRLLENKLGVRQENRVKYNQNYSKVFGNDEKALEQIAKSEKE 119


>AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 21.0 bits (42), Expect = 2.9
 Identities = 12/42 (28%), Positives = 20/42 (47%)

Query: 37  FFMLPRRMRTQQENIQKTLQEMQRRFPDLNITEEDLKNAEKE 78
           F +L  ++  +QEN  K  Q   + F +     E +  +EKE
Sbjct: 138 FRLLENKLGVRQENRVKYNQNYSKVFGNDEKALEQIAKSEKE 179


>AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 21.0 bits (42), Expect = 2.9
 Identities = 12/42 (28%), Positives = 20/42 (47%)

Query: 37  FFMLPRRMRTQQENIQKTLQEMQRRFPDLNITEEDLKNAEKE 78
           F +L  ++  +QEN  K  Q   + F +     E +  +EKE
Sbjct: 138 FRLLENKLGVRQENRVKYNQNYSKVFGNDEKALEQIAKSEKE 179


>DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11
           protein.
          Length = 366

 Score = 20.2 bits (40), Expect = 5.0
 Identities = 8/15 (53%), Positives = 11/15 (73%)

Query: 48  QENIQKTLQEMQRRF 62
           +EN  K LQEM++ F
Sbjct: 153 KENFVKLLQEMKQAF 167


>AY769607-1|AAV40983.1|  196|Tribolium castaneum heat shock cognate
           70 protein.
          Length = 196

 Score = 20.2 bits (40), Expect = 5.0
 Identities = 8/14 (57%), Positives = 11/14 (78%)

Query: 42  RRMRTQQENIQKTL 55
           RR+RTQ E  ++TL
Sbjct: 89  RRLRTQCERAKRTL 102


>AY769606-1|AAV40982.1|  196|Tribolium castaneum heat shock protein
           70 protein.
          Length = 196

 Score = 20.2 bits (40), Expect = 5.0
 Identities = 8/14 (57%), Positives = 11/14 (78%)

Query: 42  RRMRTQQENIQKTL 55
           RR+RTQ E  ++TL
Sbjct: 89  RRLRTQCERAKRTL 102


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 19.8 bits (39), Expect = 6.6
 Identities = 9/28 (32%), Positives = 16/28 (57%)

Query: 51  IQKTLQEMQRRFPDLNITEEDLKNAEKE 78
           I ++L   +RR  + ++  EDL   +KE
Sbjct: 506 IDQSLGMNRRRDDEADVKTEDLDEIQKE 533


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 19.8 bits (39), Expect = 6.6
 Identities = 9/28 (32%), Positives = 16/28 (57%)

Query: 51  IQKTLQEMQRRFPDLNITEEDLKNAEKE 78
           I ++L   +RR  + ++  EDL   +KE
Sbjct: 506 IDQSLGMNRRRDDEADVKTEDLDEIQKE 533


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 19.8 bits (39), Expect = 6.6
 Identities = 9/28 (32%), Positives = 16/28 (57%)

Query: 51  IQKTLQEMQRRFPDLNITEEDLKNAEKE 78
           I ++L   +RR  + ++  EDL   +KE
Sbjct: 506 IDQSLGMNRRRDDEADVKTEDLDEIQKE 533


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 19.8 bits (39), Expect = 6.6
 Identities = 9/28 (32%), Positives = 16/28 (57%)

Query: 51  IQKTLQEMQRRFPDLNITEEDLKNAEKE 78
           I ++L   +RR  + ++  EDL   +KE
Sbjct: 506 IDQSLGMNRRRDDEADVKTEDLDEIQKE 533


>DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc
          growth factor 4 protein.
          Length = 431

 Score = 19.4 bits (38), Expect = 8.7
 Identities = 6/13 (46%), Positives = 10/13 (76%)

Query: 55 LQEMQRRFPDLNI 67
          + E++RRFP L +
Sbjct: 84 ITELKRRFPGLRV 96


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.316    0.128    0.358 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,183
Number of Sequences: 317
Number of extensions: 765
Number of successful extensions: 13
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of query: 110
length of database: 114,650
effective HSP length: 49
effective length of query: 61
effective length of database: 99,117
effective search space:  6046137
effective search space used:  6046137
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)
S2: 38 (19.4 bits)