GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002402-TA|BGIBMGA002402-PA|IPR001683|Phox-like
         (464 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    26   0.77 
DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2 pr...    23   7.2  
DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1 pr...    23   7.2  
AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-ri...    23   7.2  
AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.    23   7.2  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   7.2  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 25.8 bits (54), Expect = 0.77
 Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 3/74 (4%)

Query: 200 GKQLETNLGNFLYTRSKIIEKNYALCKLHANYGKLFSEWSVIE-KEMGDGLQKAGHYFGR 258
           G   ET    F + R +++  +        N  ++F+E+ +I  +E GD +   G YF  
Sbjct: 322 GSIWETGKNLFEFIRKQVLSGSTGKVAFDDNGDRIFAEYDIINIQENGDQV-SVGRYFYP 380

Query: 259 NDRHRI-LNLRQVN 271
           N   ++ L++ + N
Sbjct: 381 NGTEKMTLSVNESN 394


>DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2
           precursor protein.
          Length = 175

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 7/17 (41%), Positives = 15/17 (88%)

Query: 10  SPKSPKAIKTVEDFENQ 26
           S +S +++++VEDF+N+
Sbjct: 148 STQSSRSVESVEDFDNE 164


>DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1
           precursor protein.
          Length = 223

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 7/17 (41%), Positives = 15/17 (88%)

Query: 10  SPKSPKAIKTVEDFENQ 26
           S +S +++++VEDF+N+
Sbjct: 196 STQSSRSVESVEDFDNE 212


>AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-rich
           protein precursor protein.
          Length = 223

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 7/17 (41%), Positives = 15/17 (88%)

Query: 10  SPKSPKAIKTVEDFENQ 26
           S +S +++++VEDF+N+
Sbjct: 196 STQSSRSVESVEDFDNE 212


>AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.
          Length = 223

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 7/17 (41%), Positives = 15/17 (88%)

Query: 10  SPKSPKAIKTVEDFENQ 26
           S +S +++++VEDF+N+
Sbjct: 196 STQSSRSVESVEDFDNE 212


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 10/46 (21%), Positives = 20/46 (43%)

Query: 5  NTPVKSPKSPKAIKTVEDFENQDTLLKHVDITIVESEKRANGTLHV 50
          N P +  +    +   E F+  DT L+ +   + E+ +  + T  V
Sbjct: 52 NMPAEEGEGMAGVTGEEPFDTLDTFLRELQADLAEASQPTSTTTSV 97


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.132    0.383 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,281
Number of Sequences: 429
Number of extensions: 5894
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 6
length of query: 464
length of database: 140,377
effective HSP length: 60
effective length of query: 404
effective length of database: 114,637
effective search space: 46313348
effective search space used: 46313348
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 45 (22.2 bits)