GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002401-TA|BGIBMGA002401-PA|IPR000092|Polyprenyl
synthetase, IPR008949|Terpenoid synthase
         (307 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase s...    59   9e-10
SPBC36.06c |spo9||farnesyl pyrophosphate synthetase|Schizosaccha...    50   4e-07
SPAC6F12.13c |fps1||geranyltranstransferase Fps1|Schizosaccharom...    37   0.004
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo...    31   0.27 
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb...    31   0.27 
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    29   1.1  
SPAC521.03 |||short chain dehydrogenase |Schizosaccharomyces pom...    26   5.9  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    26   5.9  

>SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase
           subunit Dps1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 58.8 bits (136), Expect = 9e-10
 Identities = 49/193 (25%), Positives = 88/193 (45%), Gaps = 16/193 (8%)

Query: 27  KISEEKLRLVGDIVQMLHNASLLIDDIQDNSILRRGIPVAHSIYGVASTINAANYAMIIA 86
           +I   +LRL   I +M+H ASLL DD+ D++ +RRG P ++  +G   +I A N+ +  A
Sbjct: 114 QILPSQLRLA-QITEMIHIASLLHDDVIDHANVRRGSPSSNVAFGNRRSILAGNFILARA 172

Query: 87  LEKTLELGHPLATTVYTEQLLELHRGQGMEIYWRDNFQCPSE--------DEYKQMTIKK 138
                 L +P  T +    + +L RG+ +++    N   PS         D Y + +  K
Sbjct: 173 STAMARLRNPQVTELLATVIADLVRGEFLQL---KNTMDPSSLEIKQSNFDYYIEKSFLK 229

Query: 139 TGGLFMLAIRLMQLFSENKSDFTNLSA----VLGLYFQIRDDYCNLSMREYTENKSYCED 194
           T  L   + +   +  +        +      +G  FQ+ DD  + + ++ T  K+   D
Sbjct: 230 TASLISKSCKASTILGQCSPTVATAAGEYGRCIGTAFQLMDDVLDYTSKDDTLGKAAGAD 289

Query: 195 LTEGKFSFPIIHA 207
           L  G  + P++ A
Sbjct: 290 LKLGLATAPVLFA 302


>SPBC36.06c |spo9||farnesyl pyrophosphate
           synthetase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 351

 Score = 50.0 bits (114), Expect = 4e-07
 Identities = 61/221 (27%), Positives = 96/221 (43%), Gaps = 17/221 (7%)

Query: 11  GKQIRTKLASAFNYWLKISEEK-LRLVGDIVQMLHNASLLIDDIQDNSILRRGIPVAHSI 69
           G  +   L S  N  L+ +E +   L+G ++++L    L+ DDI D SI RRG+   + +
Sbjct: 59  GLAVLQSLTSLINRELEEAEFRDAALLGWLIEILQGCFLMADDIMDQSIKRRGLDCWYLV 118

Query: 70  YGVASTINAANY--AMIIALEKTLELGHP-----LATTVYTEQLLELHRGQGMEIYWRDN 122
            GV   IN +    A I  L +      P     L T      L EL + + +       
Sbjct: 119 VGVRRAINESQLLEACIPLLIRKYFRNMPYYVDLLDTFREVTFLTELGQQEDLLSSRDGE 178

Query: 123 FQCPSEDEYKQ---MTIKKTGGLFMLAIRLMQLFSENKS----DFT-NLSAVLGLYFQIR 174
               S D  K    +T K +   F L I+   L S N +    D T  LS +LG YFQ++
Sbjct: 179 ASLRSFDLMKYDFIITYKTSFYSFYLPIKCALLLSRNSNQKAYDTTIKLSKLLGYYFQVQ 238

Query: 175 DDYCNLSMREYTENKSYCEDLTEGKFSFPIIHAIRSQEDDK 215
           DDY +    +YT       D+ + K ++ + +A +    D+
Sbjct: 239 DDYLD-CFGDYTVLGKVGMDIQDNKCTWLVCYAEKFASADQ 278


>SPAC6F12.13c |fps1||geranyltranstransferase
           Fps1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 347

 Score = 36.7 bits (81), Expect = 0.004
 Identities = 52/203 (25%), Positives = 92/203 (45%), Gaps = 17/203 (8%)

Query: 32  KLRLVGDIVQMLHNASLLIDDIQDNSILRRGIPVAHSIYGVAS-TINAA---NYAMIIAL 87
           K  ++G +V++L +  L+ DDI D S  RRG P  + + GV +  IN A     A+   L
Sbjct: 76  KAAVLGWMVELLQSFFLIADDIMDASKTRRGQPCWYLMPGVGNIAINDAFMVESAIYFLL 135

Query: 88  EKTL--ELGHPLATTVYTEQLLELHRGQGMEIYW--RDNFQCP--SEDEYKQMTIKKTGG 141
           +K    E  +     ++ +   +   GQ +++     D+      S  ++  + I KT  
Sbjct: 136 KKHFRQESCYVDLIELFHDVTFQTELGQQLDLLTAPEDSVDLSKFSLQKHSFIVIYKTAF 195

Query: 142 L-FMLAIRL-MQLFS----ENKSDFTNLSAVLGLYFQIRDDYCNLSMREYTENKSYCEDL 195
             F L + L M L      EN     ++  +LG YFQ++DDY +    + T       D+
Sbjct: 196 YSFYLPVALAMHLAGVATPENLKCAQDILIILGKYFQVQDDYLD-CYGDPTVTGKIGTDI 254

Query: 196 TEGKFSFPIIHAIRSQEDDKQVL 218
            + K S+ I  A+     +++V+
Sbjct: 255 LDNKCSWIINLALAKCTPEQRVI 277


>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
           Aah4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 774

 Score = 30.7 bits (66), Expect = 0.27
 Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 5/84 (5%)

Query: 35  LVGDIVQMLHNASLLI---DDIQDN--SILRRGIPVAHSIYGVASTINAANYAMIIALEK 89
           L+GD + M++N   L    +++  N  +I  +G P  +  Y   STIN    AMI + + 
Sbjct: 575 LMGDGIPMMYNGQELAMRGEEVPYNRPAIWEKGFPKRNPYYKFTSTINRFRKAMIESKDG 634

Query: 90  TLELGHPLATTVYTEQLLELHRGQ 113
              L      ++  +++L L RG+
Sbjct: 635 EAFLNMQSDISIVDKRILLLRRGK 658


>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 30.7 bits (66), Expect = 0.27
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 3/52 (5%)

Query: 172 QIRDDYCNLSMREYTENKS-YCEDLTEGKFSFPII--HAIRSQEDDKQVLHL 220
           ++ DDY +   +  T+ KS   +   E K   PI   H I  +EDD+++ HL
Sbjct: 69  ELNDDYLDAHRKSSTKKKSSQNKQAKESKLLDPIAFQHKIALEEDDREIAHL 120


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1647

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 2/62 (3%)

Query: 45  NASLLIDDIQDNSILRRGIPVAHSIYGVASTINAANYAMIIALEKTLELGHPLATTVYTE 104
           +  L +D+IQ  S+L+RGI  + ++    + + AA Y   +A E+ LE    L   V  +
Sbjct: 87  STQLNLDEIQCASLLQRGIEASQNL--DRTPVQAALYFFFLAREQLLECLESLTRVVGLK 144

Query: 105 QL 106
            L
Sbjct: 145 DL 146


>SPAC521.03 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 259

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 28/108 (25%), Positives = 43/108 (39%), Gaps = 11/108 (10%)

Query: 128 EDEYKQMTIKKTGGLFMLAIRLMQLFSENKSDFTNLSAVLGLYFQIRDDYCNLSMREYTE 187
           +D    +T    G + M    L   +S+NK D  N+ ++ G     R+ Y   S+  Y  
Sbjct: 108 DDAVTMITTNVLGMMAMTRAVLPIFYSKNKGDILNVGSIAG-----RESYVGGSV--YCS 160

Query: 188 NKSYCEDLTEGKFSFPIIHAIRSQEDDKQVL--HLSIISF--DRTKLD 231
            KS     T       I   IR  E D  ++    S++ F  D+ K D
Sbjct: 161 TKSALAQFTSALRKETIDTRIRIMEVDPGLVETEFSVVRFHGDKQKAD 208


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 10/51 (19%)

Query: 157 KSDFTNL----SAVLGLYFQIRDDYCNLSMREYT------ENKSYCEDLTE 197
           K  FT+L     ++  LY ++RDD+ N+  +  T      + K+ CE+LT+
Sbjct: 779 KQSFTSLVNSYQSISNLYHELRDDHVNMQSQNNTLLESESKLKTDCENLTQ 829


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.137    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,381,206
Number of Sequences: 5004
Number of extensions: 56761
Number of successful extensions: 147
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 140
Number of HSP's gapped (non-prelim): 10
length of query: 307
length of database: 2,362,478
effective HSP length: 73
effective length of query: 234
effective length of database: 1,997,186
effective search space: 467341524
effective search space used: 467341524
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 54 (25.8 bits)