GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002401-TA|BGIBMGA002401-PA|IPR000092|Polyprenyl
synthetase, IPR008949|Terpenoid synthase
         (307 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38122| Best HMM Match : No HMM Matches (HMM E-Value=.)              48   1e-05
SB_12936| Best HMM Match : LRR_1 (HMM E-Value=0.00017)                 30   2.1  
SB_41561| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.28)           30   2.7  
SB_47455| Best HMM Match : NACHT (HMM E-Value=4.3e-05)                 29   4.8  
SB_35785| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.3  
SB_22570| Best HMM Match : Filament (HMM E-Value=0.1)                  28   8.4  

>SB_38122| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 273

 Score = 48.0 bits (109), Expect = 1e-05
 Identities = 34/106 (32%), Positives = 53/106 (50%), Gaps = 5/106 (4%)

Query: 39  IVQMLHNASLLIDDIQDNSILRRGIPVAHSIYGVASTINAANYAMIIALEKTLELGHPLA 98
           I +M+H ASL+ DD+ D +  RRG    + +YG  + I A +Y +          G+  A
Sbjct: 91  ISEMIHTASLIHDDVIDRADTRRGKVAINLMYGDKNCILAGDYILSRVSLAIARFGNVEA 150

Query: 99  TTVYTEQLLELHRGQGMEIYWRDNFQCPSE--DEYKQMTIKKTGGL 142
             +  E + EL RG+ M++  ++N   P E    Y + T KKT  L
Sbjct: 151 VKLLAEIVDELVRGEFMQLGSKEN---PDERFTHYLKKTYKKTASL 193


>SB_12936| Best HMM Match : LRR_1 (HMM E-Value=0.00017)
          Length = 472

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 3/81 (3%)

Query: 197 EGKFSFPIIHAIRSQEDDKQVLHLSIISFDRTKLDILRQRTRDVEVKRYCITLLEKLGSF 256
           +GK    +  A+      K +  + + +FD    D+L + +  +  KR  I  L+ LGS+
Sbjct: 83  DGKSVVKLFDAMIQSTSLKSLGSIDVFNFDD---DVLTKLSELIRRKRTLINGLQLLGSW 139

Query: 257 RYTRGILNDLDARAREEVSRL 277
           R TRG     +A A   +S L
Sbjct: 140 RPTRGCQVFANALAASNISTL 160


>SB_41561| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.28)
          Length = 1643

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 25/101 (24%), Positives = 49/101 (48%), Gaps = 10/101 (9%)

Query: 17   KLASAFNYWLKISEEKLRLVGDIVQMLHNASLLIDDIQD-NSILRRGIPVAHSIYGVAST 75
            K+A  +  + K+SE    LV    +ML ++ L+ DD+ D +S+L + +          +T
Sbjct: 1049 KVAQKYEKFAKMSEN---LVAKAYEMLKSSGLVSDDLSDSSSLLEQALRFCQQTAKPQAT 1105

Query: 76   INAANYAMIIALEKTLELGHPLATTVYTEQLLELHRGQGME 116
              + + + + + E +L+  HP     + EQ +   +GQ  E
Sbjct: 1106 PQSCSSSAVHSQESSLD-SHP-----FPEQDISKTKGQDQE 1140


>SB_47455| Best HMM Match : NACHT (HMM E-Value=4.3e-05)
          Length = 899

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 26/101 (25%), Positives = 45/101 (44%), Gaps = 6/101 (5%)

Query: 180 LSMREYTENKSYCEDLT---EGKFSFPIIHAIRSQEDDKQVLHLSIISFDRTKLDILRQR 236
           +S  +  E   + +D +   +GK    +  A+      K +  + +  FD    D+L + 
Sbjct: 599 ISKNKVIEKLDFSQDFSCFFDGKSVVKLFDAMIQSTSLKSLGSIDVKYFDD---DVLTKL 655

Query: 237 TRDVEVKRYCITLLEKLGSFRYTRGILNDLDARAREEVSRL 277
           +  +  KR  I  L+ LGS+R TRG     +A A   +S L
Sbjct: 656 SELIRRKRTLINGLQLLGSWRPTRGCQVFANALAASNISTL 696


>SB_35785| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1089

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 27/84 (32%), Positives = 37/84 (44%), Gaps = 6/84 (7%)

Query: 220 LSIISFDRTKLDILRQRTRDVEV---KRYCITLLEKLGSFRYTR---GILNDLDARAREE 273
           L + SF   KL +L      VE+    R   T+    G F+Y R   G+ +   A  R  
Sbjct: 471 LGLTSFTGHKLKVLGTIETVVELDQDSRKFTTINTVRGMFQYKRLPYGVASAPAAFQRAI 530

Query: 274 VSRLGGNPQLEALLDDLLTWRQEG 297
              L G PQ+   LDD+L   +EG
Sbjct: 531 EELLHGIPQVAVYLDDILVTDKEG 554


>SB_22570| Best HMM Match : Filament (HMM E-Value=0.1)
          Length = 601

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 39/179 (21%), Positives = 77/179 (43%), Gaps = 10/179 (5%)

Query: 128 EDEYKQMTIKKTGGLFMLAIRLMQLFSENKSDFTNLSAVLGLYFQIRDDYCNLSMREYTE 187
           +DEY+Q  I+K       A+R      E ++D T  +  + L      +Y +   +EYT+
Sbjct: 34  DDEYEQR-IEKMKADHAKALRERSQVIEYQTDSTRKATEI-LEKSKELEYLD---KEYTK 88

Query: 188 NKSYCEDLTEGKFSFPIIHAIRSQEDDKQVLHLSIISFDRTKLDILRQRTRDV-EVKRYC 246
            K   ++L E      +     + E  ++ L   I S ++    +  +  + V E+ +  
Sbjct: 89  QKYVLDELQERLND--LTQERENYETREKTLQSKITSIEKENNSLRDELNKTVSELTQTT 146

Query: 247 ITLLEKLGSFRYTRGILNDLDARAREEVSRLGGNPQLEALLDDLLTWRQEGDDANDQMN 305
             L +K           +DL+ R ++   +L GN + ++L  +  T  +   +A DQ+N
Sbjct: 147 AELQDKQTMLESVHERNSDLERRLQD--CKLSGNDKYDSLERERQTLEKRLSEARDQLN 203


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.321    0.137    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,732,368
Number of Sequences: 59808
Number of extensions: 386245
Number of successful extensions: 822
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 821
Number of HSP's gapped (non-prelim): 6
length of query: 307
length of database: 16,821,457
effective HSP length: 82
effective length of query: 225
effective length of database: 11,917,201
effective search space: 2681370225
effective search space used: 2681370225
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 60 (28.3 bits)