GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002401-TA|BGIBMGA002401-PA|IPR000092|Polyprenyl
synthetase, IPR008949|Terpenoid synthase
         (307 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80443-7|AAB37678.2|  393|Caenorhabditis elegans Coenzyme q (ubi...    56   2e-08
Z81106-1|CAB03221.2|  352|Caenorhabditis elegans Hypothetical pr...    34   0.15 
U53180-8|AAA96290.1|  452|Caenorhabditis elegans Sulfatase domai...    29   4.2  
U80837-7|AAB37907.1|  760|Caenorhabditis elegans Hypothetical pr...    28   7.3  
U80454-6|AAB37879.1|  786|Caenorhabditis elegans Hypothetical pr...    28   7.3  

>U80443-7|AAB37678.2|  393|Caenorhabditis elegans Coenzyme q
           (ubiquinone) biosynthesisprotein 1 protein.
          Length = 393

 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 43/180 (23%), Positives = 80/180 (44%), Gaps = 9/180 (5%)

Query: 36  VGDIVQMLHNASLLIDDIQDNSILRRGIPVAHSIYGVASTINAANYAMIIALEKTLELGH 95
           +G I +M+H ASL+ DD+ D +  RRG    ++++G   ++   ++ +  A +    +G 
Sbjct: 138 IGMIAEMIHTASLVHDDVIDEANTRRGSASVNAVWGNKMSVLVGDFILARATQILCSIGK 197

Query: 96  PLATTVYTEQLLELHRGQGMEIYWRDNFQCPSE--DEYKQMTIKKTGGLFMLAIRLMQLF 153
           P   +V    + +L  G+ M++        P +    Y + T +KT  LF  + R   + 
Sbjct: 198 PNIISVMASIIEDLVLGEFMQMSTTPTDATPVDRMKAYIEKTHRKTASLFASSCRSAAIL 257

Query: 154 SENKSDFT------NLSAVLGLYFQIRDDYCNLSMREYTENKSYCEDLTEGKFSFPIIHA 207
           ++  SD             LG+ FQ+ DD  +         K    DL  G  + P+++A
Sbjct: 258 ADG-SDLKLHEIAFEYGRNLGIAFQLADDLLDFIATADEMGKPVAADLKLGLATAPVLYA 316


>Z81106-1|CAB03221.2|  352|Caenorhabditis elegans Hypothetical
           protein R06C1.2 protein.
          Length = 352

 Score = 33.9 bits (74), Expect = 0.15
 Identities = 46/183 (25%), Positives = 82/183 (44%), Gaps = 17/183 (9%)

Query: 40  VQMLHNASLLIDDIQDNSILRRGIPVAHSIYGVA-STINAANYAMIIALEKTLELGHPLA 98
           ++++ +  L+ DDI DNS  RRG P      GV  S IN A + M   +E  L L  P  
Sbjct: 88  LEIIQSFYLIADDIMDNSETRRGKPCWFRREGVGMSAINDA-FIMDSFVEDILRLALP-- 144

Query: 99  TTVYTEQLLELHR--------GQGMEIYWRDNFQCPSEDEYKQMTIKKTGGLFML-AIRL 149
             V  ++L E +R        GQ ++    +     + D Y+ M   KT    +   I++
Sbjct: 145 GHVNLDRLCEAYRKSKQKTLIGQFLDTSSVNQISSFTWDRYELMVENKTSHYTVFHPIQM 204

Query: 150 MQLFSENKSDFTNLSAV---LGLYFQIRDDYCNLSMREYTENKSYCEDLTEGKFSFPIIH 206
             + S+  +   ++  V   +G  FQ +DD+ ++        K    D+ +GK ++  + 
Sbjct: 205 ALIISDVLAYHGSVKKVAYQIGFLFQSQDDFLDVYGDPKITGK-IGTDIQDGKCTWLAVR 263

Query: 207 AIR 209
           A++
Sbjct: 264 ALQ 266


>U53180-8|AAA96290.1|  452|Caenorhabditis elegans Sulfatase domain
           protein protein 2 protein.
          Length = 452

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 16/51 (31%), Positives = 24/51 (47%)

Query: 129 DEYKQMTIKKTGGLFMLAIRLMQLFSENKSDFTNLSAVLGLYFQIRDDYCN 179
           D Y+Q  ++ T     +  + MQ  SE+KS    +  VLG Y +     CN
Sbjct: 361 DPYEQYPLQNTVKSQEIRFQAMQRLSEHKSSLVKVKNVLGSYNKTLIPCCN 411


>U80837-7|AAB37907.1|  760|Caenorhabditis elegans Hypothetical
           protein F07E5.8 protein.
          Length = 760

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 12/27 (44%), Positives = 20/27 (74%)

Query: 31  EKLRLVGDIVQMLHNASLLIDDIQDNS 57
           +KL L+G IVQ+++N + ++D I D S
Sbjct: 362 QKLHLIGYIVQIINNKNGILDKIDDIS 388


>U80454-6|AAB37879.1|  786|Caenorhabditis elegans Hypothetical
           protein T16A1.2 protein.
          Length = 786

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 12/27 (44%), Positives = 20/27 (74%)

Query: 31  EKLRLVGDIVQMLHNASLLIDDIQDNS 57
           +KL L+G IVQ+++N + ++D I D S
Sbjct: 388 QKLHLIGYIVQVINNKNGILDKIDDIS 414


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.321    0.137    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,329,036
Number of Sequences: 27539
Number of extensions: 299449
Number of successful extensions: 670
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 664
Number of HSP's gapped (non-prelim): 5
length of query: 307
length of database: 12,573,161
effective HSP length: 81
effective length of query: 226
effective length of database: 10,342,502
effective search space: 2337405452
effective search space used: 2337405452
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 59 (27.9 bits)