GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002401-TA|BGIBMGA002401-PA|IPR000092|Polyprenyl
synthetase, IPR008949|Terpenoid synthase
         (307 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   2.5  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   4.5  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   4.5  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 7/25 (28%), Positives = 19/25 (76%)

Query: 117 IYWRDNFQCPSEDEYKQMTIKKTGG 141
           +Y+++ ++ PSE++ K++T + + G
Sbjct: 343 VYFQNEYEQPSEEDLKRITNQPSEG 367


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 9/19 (47%), Positives = 12/19 (63%)

Query: 274 VSRLGGNPQLEALLDDLLT 292
           +S   GNP  + L DDLL+
Sbjct: 16  ISGCSGNPDAKRLYDDLLS 34


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
          protein.
          Length = 352

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 2/35 (5%)

Query: 41 QMLHNASLLIDDIQDNSILRRGIPVAHSIYGVAST 75
          Q +   S    D  D S+LR+G+P  H  YG A +
Sbjct: 39 QSVQQQSQQAGDPCDPSLLRQGVPGHH--YGAAGS 71


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.137    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,918
Number of Sequences: 429
Number of extensions: 3962
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 3
length of query: 307
length of database: 140,377
effective HSP length: 58
effective length of query: 249
effective length of database: 115,495
effective search space: 28758255
effective search space used: 28758255
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 44 (21.8 bits)