GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002400-TA|BGIBMGA002400-PA|undefined
         (522 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC7D4.10 |vma13||V-type ATPase subunit H|Schizosaccharomyces p...    29   2.1  
SPBC83.16c |||conserved fungal protein|Schizosaccharomyces pombe...    28   2.8  
SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p...    27   8.4  

>SPAC7D4.10 |vma13||V-type ATPase subunit H|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 450

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 6/35 (17%)

Query: 120 DDQSKD---FDFEKTEMKYDSTGMFHWSPARNLED 151
           D+ SK    FD  K+E+    TG+ HWSP+   ED
Sbjct: 322 DESSKHLSTFDMYKSEL---DTGILHWSPSHRSED 353


>SPBC83.16c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 563

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 6/48 (12%)

Query: 463 RFRDTSSSCDASSKRYVITNPPDDFSLLPTDQVFVLMQFDPGVEYRAS 510
           RF+D+ +  D + K   ++   DD S   T     L  FDPGVEYR S
Sbjct: 62  RFKDSQNRIDIAIK--ALSADKDDASKNNT----FLSTFDPGVEYRVS 103


>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 525

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 2/37 (5%)

Query: 201 KHVVIVGSVDYIRREWKMLQNLPKISVLNGSPLSRAD 237
           +H  + GSV  + +E+K LQ++  I++L    LS AD
Sbjct: 412 EHYNLAGSVQQMLQEYKSLQDI--IAILGMDELSEAD 446


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.134    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,048,158
Number of Sequences: 5004
Number of extensions: 75851
Number of successful extensions: 123
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 123
Number of HSP's gapped (non-prelim): 3
length of query: 522
length of database: 2,362,478
effective HSP length: 76
effective length of query: 446
effective length of database: 1,982,174
effective search space: 884049604
effective search space used: 884049604
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)