GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002400-TA|BGIBMGA002400-PA|undefined
         (522 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0980 + 21406822-21409496,21410322-21410376                       33   0.56 
06_03_0805 + 24775346-24775543,24775643-24775858,24775930-247759...    31   3.0  
01_06_0364 - 28749825-28750053,28750442-28750621,28751018-287511...    30   5.2  

>04_03_0980 + 21406822-21409496,21410322-21410376
          Length = 909

 Score = 33.1 bits (72), Expect = 0.56
 Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 175 DPDSPLIGLRNLVMPLRASNFHYHELKHVVIVGSVDYIRREWKMLQNLPKISVL 228
           D DSP++ L +LV   +A + H H+L  +  +    +   +W  ++  PKI ++
Sbjct: 644 DDDSPILTLAHLVQG-KAESLHVHDLSTITPLPGGQWCCLKWCRIERCPKIEIV 696


>06_03_0805 +
           24775346-24775543,24775643-24775858,24775930-24775970,
           24776510-24776551,24777019-24777055,24779796-24780092
          Length = 276

 Score = 30.7 bits (66), Expect = 3.0
 Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 4/64 (6%)

Query: 187 VMPLRASNFHYHELKHVVIVGSVDYIRREWKMLQNLPKISVLNGSPLSRADLRAVNVNLC 246
           V+ +R S+  YH +  V  VG +  I      + N  KI  LNG P +R   + V  N C
Sbjct: 64  VVQIRRSS--YHNVIRVSEVGKLIDISHVQTYVINSAKIVFLNGRPQARPG-KGV-TNTC 119

Query: 247 DMCC 250
           ++CC
Sbjct: 120 EICC 123


>01_06_0364 -
           28749825-28750053,28750442-28750621,28751018-28751147,
           28751442-28751756,28752033-28752075,28752108-28752500
          Length = 429

 Score = 29.9 bits (64), Expect = 5.2
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 1/68 (1%)

Query: 139 GMFHWSPARNLEDCILDRNQAAMTVLNGHVVVCLFADPDSPLIGLRNLVMPL-RASNFHY 197
           G   W+   + ED +LD +          V++   A     L+G+  LV  L   S+FH 
Sbjct: 208 GTVLWADDISKEDFVLDEDNGCEIGSRRVVIIKEGAGDVQALLGVIRLVEYLYNLSSFHK 267

Query: 198 HELKHVVI 205
           HE  HVV+
Sbjct: 268 HENVHVVV 275


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.320    0.134    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,167,245
Number of Sequences: 37544
Number of extensions: 488781
Number of successful extensions: 814
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 814
Number of HSP's gapped (non-prelim): 3
length of query: 522
length of database: 14,793,348
effective HSP length: 85
effective length of query: 437
effective length of database: 11,602,108
effective search space: 5070121196
effective search space used: 5070121196
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 62 (29.1 bits)