GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002400-TA|BGIBMGA002400-PA|undefined
         (522 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31795| Best HMM Match : No HMM Matches (HMM E-Value=.)             138   8e-33
SB_50107| Best HMM Match : SpoVT_AbrB (HMM E-Value=6.1)                31   1.7  

>SB_31795| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1525

 Score =  138 bits (335), Expect = 8e-33
 Identities = 68/136 (50%), Positives = 86/136 (63%), Gaps = 2/136 (1%)

Query: 365  SVLDSLMSTTYFNQNALTLIRSLITGGATPXXXXXXXXXXXXXXXYSTPESLANRDRCRV 424
            S+L SL   TYFN + LTL+R+L+TGG  P               Y  PE+   R RC++
Sbjct: 1283 SILASLNLKTYFNGDILTLVRNLVTGGVNPILEEQLAEGDGLKGGYDFPETAEIRGRCKI 1342

Query: 425  GQISLYDGPLAQFGEAGKYGDLFVAALSTYGMLCIGLYRFRDTSSS--CDASSKRYVITN 482
             Q+SLYDGPLAQFG+ G YG +F+ AL  + M+C+G+YRFRD++ S     SSKRYVI  
Sbjct: 1343 TQVSLYDGPLAQFGDGGLYGSMFLHALKFFSMICLGVYRFRDSNRSMMTAPSSKRYVIAT 1402

Query: 483  PPDDFSLLPTDQVFVL 498
            PP  F L PTD VFVL
Sbjct: 1403 PPYSFVLQPTDLVFVL 1418



 Score = 69.7 bits (163), Expect = 5e-12
 Identities = 47/153 (30%), Positives = 73/153 (47%), Gaps = 4/153 (2%)

Query: 129  EKTEMKYDSTGMFHWSPARNLEDCILDRNQAAM--TVLNGHVVVCLFADPDSPLIGLRNL 186
            +  ++++D TG F+W  A+  ++ IL R Q       +  H  +             R  
Sbjct: 1139 DPAQIRFDVTGTFYWVAAKPFDEAILVRLQGYTFRRPVRWHPTLSSLITYWFACSIRRKT 1198

Query: 187  VMPLRASNFHYHELK-HVVIVGSVDYIRREWKMLQNLPKISVLNGSPLSRADLRAVNVNL 245
            ++   A   +  +         ++  +   W+ + N  ++ +L GSP  RADLRAVN NL
Sbjct: 1199 LLSASAKCLNTEQQGVQAPQAAAIRLMSDHWEEICNFHEVYILPGSPFCRADLRAVNANL 1258

Query: 246  CDMCCILS-AKVPSNDDPTLADKEAILASLNIK 277
             DM   LS   V    DP LADK++ILASLN+K
Sbjct: 1259 ADMVVFLSGTAVDQAGDPRLADKQSILASLNLK 1291


>SB_50107| Best HMM Match : SpoVT_AbrB (HMM E-Value=6.1)
          Length = 677

 Score = 31.5 bits (68), Expect = 1.7
 Identities = 14/37 (37%), Positives = 25/37 (67%), Gaps = 1/37 (2%)

Query: 354 QPFACGTAFAVSVLDSLMSTTYFNQNALTLIRSLITG 390
           +PF+ G  F++S++D+L+  T+     +TLI SL+ G
Sbjct: 454 EPFSAGYVFSMSMIDTLLYQTFVKDYMITLI-SLLLG 489


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.320    0.134    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,105,535
Number of Sequences: 59808
Number of extensions: 566267
Number of successful extensions: 826
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 819
Number of HSP's gapped (non-prelim): 5
length of query: 522
length of database: 16,821,457
effective HSP length: 85
effective length of query: 437
effective length of database: 11,737,777
effective search space: 5129408549
effective search space used: 5129408549
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 62 (29.1 bits)