GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002399-TA|BGIBMGA002399-PA|undefined
         (118 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC688.12c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    28   0.34 
SPCC1322.08 |srk1|mkp1|MAPK-activated protein kinase Srk1|Schizo...    26   1.4  
SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|c...    24   7.2  
SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1 |Schizosaccharom...    24   7.2  
SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p...    23   9.6  

>SPAC688.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 167

 Score = 28.3 bits (60), Expect = 0.34
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 37  GLLVVLLWRACAFVCCHKEPE--LAPNDPKQKEQKAARQGKQEFEGTFMTEAK 87
           GL ++L W+     C + E E  LA    + KEQ+  ++ K+E +    TE +
Sbjct: 110 GLGLILSWKLFEVACANPEDEALLAERKQRLKEQREKKEQKKEQKKEKKTERR 162


>SPCC1322.08 |srk1|mkp1|MAPK-activated protein kinase
           Srk1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 580

 Score = 26.2 bits (55), Expect = 1.4
 Identities = 8/26 (30%), Positives = 18/26 (69%)

Query: 55  EPELAPNDPKQKEQKAARQGKQEFEG 80
           +P LA   P Q +Q+++++ + +F+G
Sbjct: 536 DPSLASRQPAQSQQQSSQRSRNKFKG 561


>SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 581

 Score = 23.8 bits (49), Expect = 7.2
 Identities = 11/39 (28%), Positives = 17/39 (43%)

Query: 14  NYDCLSVRRWWCFLLSSIFTFLAGLLVVLLWRACAFVCC 52
           +YD +       F+    FT+LA     L  R C ++ C
Sbjct: 92  SYDAMDNAAGVLFICVGYFTYLAMPATFLYGRRCVYLVC 130


>SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 23.8 bits (49), Expect = 7.2
 Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 4/57 (7%)

Query: 56  PELAPNDPKQKEQKAA-RQGKQEFEGTF-MTEAKDWAGELISGQTTTGRILVSLPCF 110
           PEL PNDP   +  AA      E+  T+  T   D   + I  + T   I  S  CF
Sbjct: 563 PELIPNDPSDDDYAAALNYAVNEYVPTYRKTFGND--SKKIKNKITAEGITGSSTCF 617


>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 536

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 92  ELISGQTTTGRILVSLPCFIIHRLANN 118
           ELI G   TG+  ++L   + H+  NN
Sbjct: 193 ELIIGDRQTGKTAIALDTILNHKRWNN 219


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.322    0.134    0.439 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 553,930
Number of Sequences: 5004
Number of extensions: 19250
Number of successful extensions: 45
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 39
Number of HSP's gapped (non-prelim): 6
length of query: 118
length of database: 2,362,478
effective HSP length: 65
effective length of query: 53
effective length of database: 2,037,218
effective search space: 107972554
effective search space used: 107972554
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 48 (23.4 bits)