Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002399-TA|BGIBMGA002399-PA|undefined
(118 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0345 + 3055522-3055827,3055968-3056022,3056744-3056919,305... 33 0.059
01_01_1224 - 9888726-9888820,9889042-9889085,9889194-9889282,988... 29 1.3
10_05_0031 + 8356046-8356361,8356439-8356648,8356735-8357043,835... 27 5.2
01_06_1762 - 39716723-39717016,39717256-39717332,39717452-397174... 27 5.2
03_05_0140 + 21193956-21193982,21194502-21194919,21195006-21195517 26 6.8
03_02_0774 + 11074508-11074880,11076270-11076370,11076453-110765... 26 6.8
12_02_0410 + 18701258-18701327,18701398-18701630,18701782-187026... 26 9.0
06_02_0017 - 10649527-10651183,10651264-10652363 26 9.0
03_06_0653 - 35305279-35306163 26 9.0
03_02_0826 + 11569961-11570301,11572220-11572454 26 9.0
>08_01_0345 +
3055522-3055827,3055968-3056022,3056744-3056919,
3057104-3057232,3057313-3057572,3057688-3058001,
3058268-3058491,3058862-3059214,3059489-3059916,
3060031-3061514
Length = 1242
Score = 33.1 bits (72), Expect = 0.059
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 54 KEPELAPNDPKQKEQKAARQGKQEFEGTFMTEAKDWAGELISGQTTTGRILVSLPCFIIH 113
K EL PN PKQ + A + F GTFM E G+++ G T VS P F +
Sbjct: 634 KSLELNPNQPKQDIRNRASAFYRMFLGTFMLE----PGKILLGSTAAAISGVSKPIFAFY 689
>01_01_1224 -
9888726-9888820,9889042-9889085,9889194-9889282,
9889390-9889434,9889849-9889956,9890042-9890127,
9890324-9890411,9890669-9890872,9891251-9891326,
9891429-9891478,9891753-9891815,9891942-9891995,
9892079-9892181,9892266-9892368,9892563-9892623,
9892746-9892786,9893183-9893348
Length = 491
Score = 28.7 bits (61), Expect = 1.3
Identities = 26/99 (26%), Positives = 37/99 (37%), Gaps = 3/99 (3%)
Query: 18 LSVRRWWCFLLSSIFTFLAGLLVVLLWRACAFVCCHKEPELAPNDPKQKEQKAARQGKQE 77
LS W + + L G+L + +A A C KE + + A
Sbjct: 133 LSTTYWMAIVTRGLLGLLCGILGPI--KAYASEVCRKEHQALGISLVTSSRAIALVVGPA 190
Query: 78 FEGTFMTEAKDWAGELISGQTTTGRILVSLPCFIIHRLA 116
G AK + L S ++ GR LPCF+I LA
Sbjct: 191 IGGFLSQPAKKYPN-LFSEESVFGRFPYFLPCFVISVLA 228
>10_05_0031 +
8356046-8356361,8356439-8356648,8356735-8357043,
8357225-8357347,8357428-8357502,8357597-8357687,
8357775-8357866,8357890-8358020
Length = 448
Score = 26.6 bits (56), Expect = 5.2
Identities = 8/10 (80%), Positives = 9/10 (90%)
Query: 15 YDCLSVRRWW 24
YDCL+ RRWW
Sbjct: 21 YDCLTNRRWW 30
>01_06_1762 -
39716723-39717016,39717256-39717332,39717452-39717498,
39717953-39718053,39718271-39718360,39718556-39720133
Length = 728
Score = 26.6 bits (56), Expect = 5.2
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 54 KEPELAPNDPKQKEQKAARQGKQEFEGTFMTEAK 87
K+P+ +P PK K Q AA G + + + +E +
Sbjct: 492 KQPKPSPEKPKPKPQAAATAGAESLQRSTASEKR 525
>03_05_0140 + 21193956-21193982,21194502-21194919,21195006-21195517
Length = 318
Score = 26.2 bits (55), Expect = 6.8
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 47 CAFVCCHKEPELAPNDPKQK--EQKAARQGKQEFEGTFMTEAKD 88
C + C +P+ D Q+ EQ AA QG + +G F +KD
Sbjct: 261 CTEIACFLDPDHVSADQVQQQVEQIAAEQGLEVEKGYFTDFSKD 304
>03_02_0774 +
11074508-11074880,11076270-11076370,11076453-11076509,
11076596-11076690,11077480-11077579,11078272-11078330,
11078874-11079001,11079362-11079440,11079708-11079795,
11080490-11080590,11080822-11080900,11081740-11081850,
11082655-11082750,11082885-11083007,11085750-11085947,
11086071-11086172,11086570-11086634,11086888-11087008,
11088540-11088697,11088823-11088973,11089414-11089521,
11089939-11090031,11090285-11090321,11090659-11090906,
11091396-11091542,11091929-11092099,11092166-11092175,
11093360-11093505
Length = 1114
Score = 26.2 bits (55), Expect = 6.8
Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 4/70 (5%)
Query: 3 SSEEEATTPNPNY---DCLSVRRWWCFLLSSIFTFLAGLLVVL-LWRACAFVCCHKEPEL 58
SS E TP Y CL + R + L G +V+L W C C H P+L
Sbjct: 387 SSLSEQLTPCSLYLPKGCLIISRVEIVRYLLVMKDLKGRVVLLDFWTYCCINCMHVLPDL 446
Query: 59 APNDPKQKEQ 68
+ K K++
Sbjct: 447 EFIEKKYKDK 456
>12_02_0410 +
18701258-18701327,18701398-18701630,18701782-18702639,
18703006-18703865,18704285-18704395,18704486-18704567,
18704643-18704735,18704795-18704989
Length = 833
Score = 25.8 bits (54), Expect = 9.0
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 67 EQKAARQGKQEFEGTFMTEAKDWAGELISGQTT-TGRILVSLP 108
E+K A +GK ++W E SGQ T G +L+ P
Sbjct: 292 EEKFAAEGKPLIVHPLNKRTRNWVWERTSGQVTEEGEMLLDCP 334
>06_02_0017 - 10649527-10651183,10651264-10652363
Length = 918
Score = 25.8 bits (54), Expect = 9.0
Identities = 11/41 (26%), Positives = 23/41 (56%)
Query: 3 SSEEEATTPNPNYDCLSVRRWWCFLLSSIFTFLAGLLVVLL 43
S+++ NP ++ RR+ F + + F+A LL+++L
Sbjct: 231 STQDGHRVSNPVLQDINSRRYKAFFVCNTTAFVASLLIIML 271
>03_06_0653 - 35305279-35306163
Length = 294
Score = 25.8 bits (54), Expect = 9.0
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 2 ASSEEEATTPNPNYDCLSVRRWWC 25
+SSEEEA + + D + RRW C
Sbjct: 178 SSSEEEAACDDDDGDECAARRWCC 201
>03_02_0826 + 11569961-11570301,11572220-11572454
Length = 191
Score = 25.8 bits (54), Expect = 9.0
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 33 TFLAGLLVVLLWRACAFVCCHKEPELAPNDPKQKEQKAARQGKQEFEGTFM 83
T LA +L L + FV P P P++KE++ +Q ++E G F+
Sbjct: 23 TILALMLATYLLVSSLFVAPDAAPPKPP--PQRKEEEQQQQQEEEEAGAFV 71
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.322 0.134 0.439
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,563,983
Number of Sequences: 37544
Number of extensions: 127002
Number of successful extensions: 339
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 332
Number of HSP's gapped (non-prelim): 11
length of query: 118
length of database: 14,793,348
effective HSP length: 73
effective length of query: 45
effective length of database: 12,052,636
effective search space: 542368620
effective search space used: 542368620
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 54 (25.8 bits)
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