Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002399-TA|BGIBMGA002399-PA|undefined
(118 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_18790| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.43
SB_14189| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.43
SB_2816| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.57
SB_378| Best HMM Match : TTL (HMM E-Value=1.8) 28 1.7
SB_36880| Best HMM Match : DUF1337 (HMM E-Value=0.54) 27 3.0
SB_18831| Best HMM Match : RVT_1 (HMM E-Value=0.0066) 27 4.0
SB_1478| Best HMM Match : GAGE (HMM E-Value=1.6) 27 4.0
SB_39061| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.3
SB_19824| Best HMM Match : zf-C2H2 (HMM E-Value=1.4e-26) 27 5.3
SB_44777| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.3
SB_12345| Best HMM Match : HLH (HMM E-Value=1.4e-12) 27 5.3
SB_10271| Best HMM Match : zf-CCHC (HMM E-Value=0.89) 26 7.0
SB_5951| Best HMM Match : 5_nucleotid (HMM E-Value=0.0013) 26 7.0
SB_44112| Best HMM Match : PA14 (HMM E-Value=5e-05) 26 9.3
SB_27246| Best HMM Match : C2 (HMM E-Value=0.026) 26 9.3
>SB_18790| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 819
Score = 30.3 bits (65), Expect = 0.43
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 45 RACA--FVCCHKEPELAPNDPKQKEQKAAR 72
+ACA F CCH +PE +PK+ K A+
Sbjct: 288 KACARGFACCHGKPEQRQVEPKKARAKTAQ 317
>SB_14189| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 328
Score = 30.3 bits (65), Expect = 0.43
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Query: 9 TTPNPNYDCLSVRRWWCFLLSSIFTFLAGLLVVLLWRACAFVCCHKEPELAPNDPKQKEQ 68
T NPN LS + + F S+FT L G LV++ H++PE+ P K + +
Sbjct: 109 TQTNPNDQFLSNAQRY-FGKPSLFTILPGCLVMI-----PVYAIHRDPEVWPESEKFQPE 162
Query: 69 KAARQGKQ 76
+ + KQ
Sbjct: 163 RFTAEAKQ 170
>SB_2816| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 503
Score = 29.9 bits (64), Expect = 0.57
Identities = 14/54 (25%), Positives = 27/54 (50%)
Query: 48 AFVCCHKEPELAPNDPKQKEQKAARQGKQEFEGTFMTEAKDWAGELISGQTTTG 101
+F+ HK+P +P ++ KA QGK E + + ++ + + Q+ TG
Sbjct: 4 SFLVKHKKPSRSPESAPEEAIKAVLQGKPETQEKSLEKSTEDKNSKVEQQSDTG 57
>SB_378| Best HMM Match : TTL (HMM E-Value=1.8)
Length = 327
Score = 28.3 bits (60), Expect = 1.7
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 33 TFLAGLLVVLLWRACAFVCCHKEPELAPNDPK 64
TF GLLV++L+ AC CCH ++P+
Sbjct: 272 TFPVGLLVMMLYYACP-GCCHPLSRTEEDEPE 302
>SB_36880| Best HMM Match : DUF1337 (HMM E-Value=0.54)
Length = 367
Score = 27.5 bits (58), Expect = 3.0
Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 8/85 (9%)
Query: 9 TTPNPNYDCLSVRRWWCFLLSSIFTFLAGLLVVLLWRACAFVCCHKEPELAPNDPKQKEQ 68
TT + + C ++ RW FL +S F F+A C K P K+K+Q
Sbjct: 38 TTKSTDDRCGTINRWPTFLDNS-FAFIAA-------EVNGLESCSKMPPKKKGKGKKKKQ 89
Query: 69 KAARQGKQEFEGTFMTEAKDWAGEL 93
A++ E EG E + EL
Sbjct: 90 GDAKESGDEEEGKKKDEPTEKEEEL 114
>SB_18831| Best HMM Match : RVT_1 (HMM E-Value=0.0066)
Length = 571
Score = 27.1 bits (57), Expect = 4.0
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 48 AFVCCHKEPELAPNDPKQKEQKAARQGKQE 77
A VC + + P+QK K AR+GKQ+
Sbjct: 116 ARVCMSTRQDHKASQPQQKPDKQARRGKQD 145
>SB_1478| Best HMM Match : GAGE (HMM E-Value=1.6)
Length = 437
Score = 27.1 bits (57), Expect = 4.0
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Query: 43 LWRACAFVCCHKEPELAPNDPKQKEQKAARQGKQEF-EGTFMTEAKDWAGELISGQTTTG 101
LW+A A + ++ P Q E + GK+E E E K+ A L +G + T
Sbjct: 131 LWKAAAIGNTSSDDAVSEYKPTQDEDSDSDDGKEELDEDELQEELKELASSL-TGNSLTD 189
Query: 102 RIL 104
++
Sbjct: 190 SVM 192
>SB_39061| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2362
Score = 26.6 bits (56), Expect = 5.3
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
Query: 42 LLWRACAFVCCHKEPELA----PNDPKQKEQKAARQGKQEFEGTFMTEAKD 88
LLW A A CH +A N K +E K ++QG+ E + T+++D
Sbjct: 1204 LLWNALAVYTCHLHTTVASFFDENRAKLEELKQSQQGEAEVKAG--TDSRD 1252
>SB_19824| Best HMM Match : zf-C2H2 (HMM E-Value=1.4e-26)
Length = 550
Score = 26.6 bits (56), Expect = 5.3
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 51 CCHKEPELAPNDPKQKEQKAARQG--KQEFEGTFM-TEAKDWAGE 92
CC PELAP+ P + + F+GT T++ W G+
Sbjct: 126 CCSPSPELAPSTPTNGNAQVSSPEICNYSFDGTTKGTDSITWLGK 170
>SB_44777| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 641
Score = 26.6 bits (56), Expect = 5.3
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 6 EEATTPNPNYDC----LSVRRWWCFLLSSIFTFLAGLLVVLLWR 45
+E + N NY ++ RW+ LL I+T G+L LW+
Sbjct: 84 QENSKKNGNYKSGKTTVNTDRWYIKLLKKIYTTRTGMLCSSLWK 127
>SB_12345| Best HMM Match : HLH (HMM E-Value=1.4e-12)
Length = 124
Score = 26.6 bits (56), Expect = 5.3
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 42 LLWRACAFVCCHKEPELAPNDPKQKEQKAARQG 74
LL AC P P P+QK++KA R+G
Sbjct: 7 LLGMACMDDVLDMTPSPEPESPQQKKKKARRRG 39
>SB_10271| Best HMM Match : zf-CCHC (HMM E-Value=0.89)
Length = 261
Score = 26.2 bits (55), Expect = 7.0
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 48 AFVCCHKEPELAPNDPKQKEQKAARQGKQ 76
A VC + + P+QK K AR+GKQ
Sbjct: 54 ARVCMSTRQDHKASQPQQKPDKQARKGKQ 82
>SB_5951| Best HMM Match : 5_nucleotid (HMM E-Value=0.0013)
Length = 405
Score = 26.2 bits (55), Expect = 7.0
Identities = 9/22 (40%), Positives = 16/22 (72%)
Query: 92 ELISGQTTTGRILVSLPCFIIH 113
+L Q T R+L+++PCF++H
Sbjct: 168 QLGMAQQTALRLLLNMPCFLLH 189
>SB_44112| Best HMM Match : PA14 (HMM E-Value=5e-05)
Length = 1433
Score = 25.8 bits (54), Expect = 9.3
Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
Query: 35 LAGLLVVLLWRACAFVCCHKEPELAP----NDPKQKEQKAARQGKQEFEGTFMTEAKDW 89
L +L L R C VCC ++ P P + A++ + FE + + +DW
Sbjct: 1114 LRAILGYLATRPCQVVCCGDYGQVPPWGDKEGPHDMLKAWAQRNIRWFESDYRCQCEDW 1172
>SB_27246| Best HMM Match : C2 (HMM E-Value=0.026)
Length = 576
Score = 25.8 bits (54), Expect = 9.3
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 2 ASSEEEATTPNPNYDCLSVRRWWCFLLSSI 31
A S E + N D S + W CFLL S+
Sbjct: 360 ADSSREVSEKFTNVDGSSEKNWTCFLLLSL 389
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.322 0.134 0.439
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,076,181
Number of Sequences: 59808
Number of extensions: 145931
Number of successful extensions: 448
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 439
Number of HSP's gapped (non-prelim): 15
length of query: 118
length of database: 16,821,457
effective HSP length: 73
effective length of query: 45
effective length of database: 12,455,473
effective search space: 560496285
effective search space used: 560496285
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 54 (25.8 bits)
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