GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002399-TA|BGIBMGA002399-PA|undefined
         (118 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                23   0.93 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   2.8  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    21   3.8  
X02007-1|CAA26038.1|   70|Apis mellifera prepromelittin protein.       20   8.7  
S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.               20   8.7  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    20   8.7  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    20   8.7  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    20   8.7  

>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 23.0 bits (47), Expect = 0.93
 Identities = 10/35 (28%), Positives = 18/35 (51%)

Query: 77  EFEGTFMTEAKDWAGELISGQTTTGRILVSLPCFI 111
           EF+GT+ T  K    + I+ + TT  ++  +   I
Sbjct: 280 EFKGTYKTLYKQMWSQNITERPTTNEVITKIDTLI 314


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 2.8
 Identities = 7/19 (36%), Positives = 14/19 (73%)

Query: 59   APNDPKQKEQKAARQGKQE 77
            AP  P+Q++Q+  +Q +Q+
Sbjct: 1446 APQQPQQQQQQQQQQQQQQ 1464


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 21.0 bits (42), Expect = 3.8
 Identities = 6/19 (31%), Positives = 11/19 (57%)

Query: 34  FLAGLLVVLLWRACAFVCC 52
           ++ G+ +  LW  C  +CC
Sbjct: 102 WIFGIHLCKLWLTCDVLCC 120


>X02007-1|CAA26038.1|   70|Apis mellifera prepromelittin protein.
          Length = 70

 Score = 19.8 bits (39), Expect = 8.7
 Identities = 9/37 (24%), Positives = 18/37 (48%)

Query: 34 FLAGLLVVLLWRACAFVCCHKEPELAPNDPKQKEQKA 70
          FL  + +V +    +++    EPE AP    + + +A
Sbjct: 3  FLVNVALVFMVVYISYIYAAPEPEPAPEPEAEADAEA 39


>S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.
          Length = 46

 Score = 19.8 bits (39), Expect = 8.7
 Identities = 10/33 (30%), Positives = 16/33 (48%)

Query: 27 LLSSIFTFLAGLLVVLLWRACAFVCCHKEPELA 59
          +L  I+ FL+ +L+   +      C  K PE A
Sbjct: 4  MLRCIYLFLSVILITSYFVTPVMPCNCKAPETA 36


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 19.8 bits (39), Expect = 8.7
 Identities = 6/18 (33%), Positives = 13/18 (72%)

Query: 25  CFLLSSIFTFLAGLLVVL 42
           C ++ ++FT +A + V+L
Sbjct: 530 CLIIFTLFTIIATIAVLL 547


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 19.8 bits (39), Expect = 8.7
 Identities = 7/18 (38%), Positives = 10/18 (55%)

Query: 30  SIFTFLAGLLVVLLWRAC 47
           ++F  L  L + L WR C
Sbjct: 122 ALFYLLVSLRIDLPWRTC 139


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 19.8 bits (39), Expect = 8.7
 Identities = 7/18 (38%), Positives = 10/18 (55%)

Query: 30  SIFTFLAGLLVVLLWRAC 47
           ++F  L  L + L WR C
Sbjct: 175 ALFYLLVSLRIDLPWRTC 192


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.134    0.439 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,583
Number of Sequences: 429
Number of extensions: 1084
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of query: 118
length of database: 140,377
effective HSP length: 51
effective length of query: 67
effective length of database: 118,498
effective search space:  7939366
effective search space used:  7939366
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (21.0 bits)
S2: 39 (19.8 bits)