Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002398-TA|BGIBMGA002398-PA|IPR004323|CutA1 divalent ion
tolerance protein
(182 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 27 1.2
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 27 2.2
SPCC1919.08c |mrpl33||mitochondrial ribosomal protein subunit Ym... 27 2.2
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 26 2.9
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac... 26 3.8
SPCC622.19 |jmj4|mug149|Jmj4 protein|Schizosaccharomyces pombe|c... 26 3.8
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom... 25 5.0
SPBC651.12c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 8.7
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 25 8.7
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 27.5 bits (58), Expect = 1.2
Identities = 15/47 (31%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 90 DEVGRTIGHGLVKNKLAACVNSIPGITSIYEWKNEINEDKETLLMIK 136
DE+ R + G+V NK +A +S+ ++YE+ + ++KET+ +K
Sbjct: 1810 DELCRRLSLGIVANKQSASQSSLIFCYNVYEF---VVKEKETVAALK 1853
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 26.6 bits (56), Expect = 2.2
Identities = 11/43 (25%), Positives = 22/43 (51%)
Query: 126 NEDKETLLMIKTRTSQVDKLTEYVRSNHPYEVCEVISVPIKNG 168
N + + LL + + ++ EY+ Y+V E+ + I+NG
Sbjct: 1017 NANLQNLLFLTAIKADKSRVMEYIDKLDKYDVDEIAEIAIENG 1059
>SPCC1919.08c |mrpl33||mitochondrial ribosomal protein subunit
YmL33|Schizosaccharomyces pombe|chr 3|||Manual
Length = 97
Score = 26.6 bits (56), Expect = 2.2
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 11/71 (15%)
Query: 68 QNILHHINFLDKYSVVYVTVPNDEVGR------TIGHGLVKNKLAA-----CVNSIPGIT 116
+++LH + ++SVVY V GR + VK KLAA + S G T
Sbjct: 20 RSVLHSLRLTKRHSVVYCDVNPINAGRIFKVKELVSVSTVKQKLAAGQEKKSLASSSGFT 79
Query: 117 SIYEWKNEINE 127
I+ + N + E
Sbjct: 80 VIHRYNNGLKE 90
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 26.2 bits (55), Expect = 2.9
Identities = 15/40 (37%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 122 KNEINEDKETLL-MIKTRTSQVDKLTEYVRSNHPYEVCEV 160
K E NE ++L I T+ +++DKLT+Y+ S++ E+ E+
Sbjct: 973 KAEFNEQCKSLQETIVTKDAELDKLTKYI-SDYKTEIQEM 1011
>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
Cut14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1172
Score = 25.8 bits (54), Expect = 3.8
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 56 VTVDLRIGSLSHQNILHHINFLDKYSVV 83
+ V L+ G ++ N L H+ F+D SVV
Sbjct: 1142 IIVSLKEGMFTNANRLFHVRFMDGSSVV 1169
>SPCC622.19 |jmj4|mug149|Jmj4 protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 473
Score = 25.8 bits (54), Expect = 3.8
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 6 SVGGDVESSSIISEREDVQA 25
SVGGD ES +++E D++A
Sbjct: 307 SVGGDPESDILLNEGNDIEA 326
>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 860
Score = 25.4 bits (53), Expect = 5.0
Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 6/85 (7%)
Query: 74 INFLDKYSVVYVTVPNDEVGRTIGHGLVKNKLAACVNSIPGITSI-YEWKNEINEDKETL 132
+NF D +P + I L K + + + +++ + + +EI+ TL
Sbjct: 391 LNFQDATYYYIEAIPFSDSAEIIKFYLEKKLIKELTSYLEALSAKGFAFSHEIS----TL 446
Query: 133 LMIKTRTSQVDKLTEYVRSNHPYEV 157
+ + + ++DKLTEYV S P E+
Sbjct: 447 IYLYIKLRKLDKLTEYV-SGCPTEI 470
>SPBC651.12c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 273
Score = 24.6 bits (51), Expect = 8.7
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 115 ITSIYEWKNEINEDKETLLMIKTRTSQVD 143
++ IY + E NE+K T+L++K + VD
Sbjct: 219 LSDIYLVEAEKNEEKCTVLLLKRSNTDVD 247
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 24.6 bits (51), Expect = 8.7
Identities = 22/102 (21%), Positives = 45/102 (44%), Gaps = 8/102 (7%)
Query: 62 IGSLSHQNILHHINFLDKYSVVYVTVPNDEVGRTIGHGLVKNKLAACVNSIPGITSIYEW 121
+G S+ + LH I FL+ + +++ D + ++N + GI
Sbjct: 3079 LGKTSYFSCLHFIRFLNTFCLIF---GRDANKLSKEKSRIENGFKKIKETSQGIDKF--- 3132
Query: 122 KNEINEDKETLLMIKTRTSQVDKLTEYVRSNHPYEVCEVISV 163
E D++ +L KT+T+ D+L +++ E +V S+
Sbjct: 3133 -KEALSDQQNVLFSKTKTAN-DRLQCIIQTKQAVEAKKVYSL 3172
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.314 0.133 0.386
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 779,592
Number of Sequences: 5004
Number of extensions: 28328
Number of successful extensions: 57
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 52
Number of HSP's gapped (non-prelim): 10
length of query: 182
length of database: 2,362,478
effective HSP length: 69
effective length of query: 113
effective length of database: 2,017,202
effective search space: 227943826
effective search space used: 227943826
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 51 (24.6 bits)
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