GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002398-TA|BGIBMGA002398-PA|IPR004323|CutA1 divalent ion
tolerance protein
         (182 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_06_0186 + 11595041-11595182,11596442-11596473,11596628-115967...    82   3e-16
10_06_0185 + 11592108-11592265,11592585-11592685,11593917-115939...    45   4e-05
08_01_1009 - 10211687-10212070,10212165-10212314,10213223-10214080     27   8.9  
07_03_0480 + 18567759-18567956,18568140-18569226,18570025-18570380     27   8.9  

>10_06_0186 +
           11595041-11595182,11596442-11596473,11596628-11596722,
           11596841-11596925
          Length = 117

 Score = 81.8 bits (193), Expect = 3e-16
 Identities = 36/67 (53%), Positives = 50/67 (74%)

Query: 110 NSIPGITSIYEWKNEINEDKETLLMIKTRTSQVDKLTEYVRSNHPYEVCEVISVPIKNGN 169
           NS  GI S+Y W+ ++  D E LL+IKTR S +D LTE+V++NH Y+V EVI++PIK GN
Sbjct: 44  NSGNGIESVYWWEGKVQTDAEELLIIKTRESLLDALTEHVKANHEYDVPEVIALPIKGGN 103

Query: 170 PPYLKWI 176
             YL+W+
Sbjct: 104 LKYLEWL 110


>10_06_0185 +
           11592108-11592265,11592585-11592685,11593917-11593979,
           11594407-11594426
          Length = 113

 Score = 44.8 bits (101), Expect = 4e-05
 Identities = 18/32 (56%), Positives = 23/32 (71%)

Query: 82  VVYVTVPNDEVGRTIGHGLVKNKLAACVNSIP 113
           VVYVTVPN E G+ +   ++  KLAACVN +P
Sbjct: 76  VVYVTVPNKEAGKRLAGSIISEKLAACVNIVP 107


>08_01_1009 - 10211687-10212070,10212165-10212314,10213223-10214080
          Length = 463

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 14/40 (35%), Positives = 22/40 (55%)

Query: 77  LDKYSVVYVTVPNDEVGRTIGHGLVKNKLAACVNSIPGIT 116
           L++  +VYVT+P    G  + H +V  +  A +N  P IT
Sbjct: 172 LERLDLVYVTLPFAGAGTQLEHLIVAAEKLAVLNLSPVIT 211


>07_03_0480 + 18567759-18567956,18568140-18569226,18570025-18570380
          Length = 546

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 2/49 (4%)

Query: 105 LAACVNSIPGITSIYEWKNEINEDKETLLMIKTRTSQVDK-LTEYVRSN 152
           L+AC +S P +    +  +  ++D E LLM   + +Q+DK L   V+S+
Sbjct: 257 LSACCHSRPSMEGAQQ-HSVASQDDEQLLMFSDQENQIDKTLLTLVKSD 304


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.314    0.133    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,841,793
Number of Sequences: 37544
Number of extensions: 159653
Number of successful extensions: 214
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 211
Number of HSP's gapped (non-prelim): 4
length of query: 182
length of database: 14,793,348
effective HSP length: 78
effective length of query: 104
effective length of database: 11,864,916
effective search space: 1233951264
effective search space used: 1233951264
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 57 (27.1 bits)