GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002398-TA|BGIBMGA002398-PA|IPR004323|CutA1 divalent ion
tolerance protein
         (182 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44365| Best HMM Match : CutA1 (HMM E-Value=6.8005e-42)              93   9e-20
SB_30394| Best HMM Match : Helicase_C (HMM E-Value=1e-20)              29   2.3  
SB_46059| Best HMM Match : Astacin (HMM E-Value=2.8e-17)               28   3.9  
SB_9051| Best HMM Match : Y_phosphatase (HMM E-Value=0)                28   3.9  
SB_56290| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.2  
SB_47508| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  
SB_23205| Best HMM Match : Helicase_C (HMM E-Value=3.9e-14)            27   9.1  
SB_55653| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  

>SB_44365| Best HMM Match : CutA1 (HMM E-Value=6.8005e-42)
          Length = 149

 Score = 93.5 bits (222), Expect = 9e-20
 Identities = 39/99 (39%), Positives = 64/99 (64%)

Query: 82  VVYVTVPNDEVGRTIGHGLVKNKLAACVNSIPGITSIYEWKNEINEDKETLLMIKTRTSQ 141
           ++  T P+ E+ + +   LV  KLAACV+ IP + SI+ W  +I ED E L+++KT    
Sbjct: 44  IILTTCPSMEIAKNLSTALVTKKLAACVSIIPKVLSIFFWNGKIVEDTEALMVMKTTQLM 103

Query: 142 VDKLTEYVRSNHPYEVCEVISVPIKNGNPPYLKWIGDIV 180
              +  +++++HPY+V EV+++ IK+GN  Y+KWI D V
Sbjct: 104 AKNVINFIKTSHPYDVPEVLTLAIKDGNSEYMKWIHDSV 142


>SB_30394| Best HMM Match : Helicase_C (HMM E-Value=1e-20)
          Length = 556

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 4/62 (6%)

Query: 99  GLVKNKLAACVNSIPGITSIYEWKNEINEDKETLLMIKTRTS---QVDKLTEYVRSNHPY 155
           G V+  +  C  SI     IYE  +E  E KET  M  ++T    Q + L E+++SN   
Sbjct: 254 GQVEKTIIYC-KSINACGDIYEVLSENVESKETYAMFHSKTPDSIQKEVLGEFIKSNSKI 312

Query: 156 EV 157
            V
Sbjct: 313 RV 314


>SB_46059| Best HMM Match : Astacin (HMM E-Value=2.8e-17)
          Length = 1775

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 15/61 (24%), Positives = 34/61 (55%), Gaps = 1/61 (1%)

Query: 53   DSKVTVDLRIGSLSHQNILHHINFLDKYSVVYVTVPNDEVGRTIGHGLVKNKLAACVNSI 112
            DS V  D  + +++ QN++H +N +D  + +  +       +T+ +G+++ KL+  V  +
Sbjct: 1165 DSFVQKDSSLSNIAQQNLVHALNNMDNTTQLNTSGIKLNGSKTLNNGILR-KLSNEVQVV 1223

Query: 113  P 113
            P
Sbjct: 1224 P 1224


>SB_9051| Best HMM Match : Y_phosphatase (HMM E-Value=0)
          Length = 1831

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 14/54 (25%), Positives = 24/54 (44%)

Query: 116  TSIYEWKNEINEDKETLLMIKTRTSQVDKLTEYVRSNHPYEVCEVISVPIKNGN 169
            T++  W+  +     T++M+ T        TEY  + HP     V+  P+ N N
Sbjct: 1367 TTVEFWRMVMQYKAGTIVMLNTLEETGQTYTEYWPTEHPEIYGSVLVEPLSNDN 1420


>SB_56290| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 486

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 20/92 (21%), Positives = 43/92 (46%), Gaps = 7/92 (7%)

Query: 94  RTIGHGLVKNKL--AACVNSIPGITSIYEWKNEINEDKETLLMIKTRTSQVDKLTEYVRS 151
           R +G+GL   ++   + ++++PGI  +Y       +D ET+ + +       KL +Y  +
Sbjct: 279 RYLGYGLRAAEIDGISWMDALPGILQVYRATPHARKDTETVNLEERYGQYQQKLRDYAEN 338

Query: 152 N-----HPYEVCEVISVPIKNGNPPYLKWIGD 178
                 H   V +++ V   N +    +++GD
Sbjct: 339 RRGAIPHDLSVGDIVFVANMNRSKLDPRYLGD 370


>SB_47508| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2143

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 28/120 (23%), Positives = 49/120 (40%), Gaps = 10/120 (8%)

Query: 55   KVTVDLRIGSLSHQNILHHINFLDKYSVVYVTVPNDEVGRTIGHGLVKNKLAACVNSIPG 114
            +V  DLR+ S        H+   D+          D V RT  H +  +++   +     
Sbjct: 1422 RVRTDLRVTSTDRVRADLHVTSTDRVRTDLRVTSTDRV-RTDLHVISTDRVRTYLR---- 1476

Query: 115  ITSIYEWKNEI-----NEDKETLLMIKTRTSQVDKLTEYVRSNHPYEVCEVISVPIKNGN 169
            +TS    K ++     +  +E  LMI     Q++K  +YVR+ + Y   E   +  K G+
Sbjct: 1477 VTSADRVKTDLRVTSTDRAEEIKLMISPYLRQIEKEAKYVRAMYDYVTQEPNLLSFKKGD 1536


>SB_23205| Best HMM Match : Helicase_C (HMM E-Value=3.9e-14)
          Length = 1197

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 18/59 (30%), Positives = 28/59 (47%)

Query: 89  NDEVGRTIGHGLVKNKLAACVNSIPGITSIYEWKNEINEDKETLLMIKTRTSQVDKLTE 147
           ND VG  I  G  K+K      S+ G+  + E K +  ED +T    K R +  + L++
Sbjct: 17  NDMVGGLIKKGSSKHKFKLPEKSVLGLQKLAEEKRKWKEDIDTSDSKKARLATGEGLSK 75


>SB_55653| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 390

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 2/56 (3%)

Query: 61  RIGSLSHQNILHHINFLDKYSVVYVTVPNDEVGRTIGHGLVKNKLAACV-NSIPGI 115
           R+GS +    +   +F    +VV   VP + V  ++G G+V N +   V N++ G+
Sbjct: 322 RVGSAAQTKAMKQTSFAGLSNVVIGAVPTNVVPSSVG-GVVPNNVDGVVPNNVDGV 376


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.314    0.133    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,598,067
Number of Sequences: 59808
Number of extensions: 198150
Number of successful extensions: 328
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 325
Number of HSP's gapped (non-prelim): 8
length of query: 182
length of database: 16,821,457
effective HSP length: 78
effective length of query: 104
effective length of database: 12,156,433
effective search space: 1264269032
effective search space used: 1264269032
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 57 (27.1 bits)