GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002398-TA|BGIBMGA002398-PA|IPR004323|CutA1 divalent ion
tolerance protein
         (182 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46242-6|CAA86327.3|  115|Caenorhabditis elegans Hypothetical pr...    84   5e-17
AC024208-2|AAF36055.1|  204|Caenorhabditis elegans Hypothetical ...    32   0.28 
Z81470-3|CAB03880.1|  401|Caenorhabditis elegans Hypothetical pr...    30   0.85 
Z69884-4|CAA93751.2|  913|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AC006630-8|AAK68330.1|  232|Caenorhabditis elegans Hypothetical ...    27   7.9  

>Z46242-6|CAA86327.3|  115|Caenorhabditis elegans Hypothetical
           protein F35G12.7 protein.
          Length = 115

 Score = 84.2 bits (199), Expect = 5e-17
 Identities = 41/100 (41%), Positives = 60/100 (60%)

Query: 79  KYSVVYVTVPNDEVGRTIGHGLVKNKLAACVNSIPGITSIYEWKNEINEDKETLLMIKTR 138
           K  V YVT P+ EV  T+    V   LAAC N IP +TS+Y+W+ +I ED+E ++++KT 
Sbjct: 7   KMVVAYVTAPSKEVAMTVARTTVTEALAACANVIPEVTSVYKWQGKIEEDQEHVVILKTV 66

Query: 139 TSQVDKLTEYVRSNHPYEVCEVISVPIKNGNPPYLKWIGD 178
            S+V++L+  VRS HP E     ++ I    P +  WI D
Sbjct: 67  ESKVEELSARVRSLHPAETPCFFTLAIDKITPDFGGWIVD 106


>AC024208-2|AAF36055.1|  204|Caenorhabditis elegans Hypothetical
           protein Y75B7B.2 protein.
          Length = 204

 Score = 31.9 bits (69), Expect = 0.28
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)

Query: 122 KNEINEDKETLLMIKTRTSQVDKLTEYVRSNHPY-EVCEVISVP 164
           KN I     TLL  +T+T + + LT+ +  N  Y ++C++  +P
Sbjct: 19  KNGIKNGNHTLLCYETKTEEQNPLTKLIEDNVEYSKLCQLCKIP 62


>Z81470-3|CAB03880.1|  401|Caenorhabditis elegans Hypothetical
           protein C14A6.3 protein.
          Length = 401

 Score = 30.3 bits (65), Expect = 0.85
 Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 11/81 (13%)

Query: 66  SHQNILHHINFLDKYSVVYVTVPNDEVGRTIGHGLVKNKLAACVNSIP----GITSIYEW 121
           S++++L   N + KY  +   +P D +           K+  C NSIP     +TSI E 
Sbjct: 213 SNEHLLIVSNAIQKYDPLVTQLPIDSINSI-------EKITLCCNSIPEITVNLTSILEL 265

Query: 122 KNEINEDKETLLMIKTRTSQV 142
           ++  ++  +  +++KT + Q+
Sbjct: 266 RDIASDTDKLFVLLKTNSIQL 286


>Z69884-4|CAA93751.2|  913|Caenorhabditis elegans Hypothetical
           protein F31F6.5 protein.
          Length = 913

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 9/30 (30%), Positives = 20/30 (66%)

Query: 63  GSLSHQNILHHINFLDKYSVVYVTVPNDEV 92
           GS+   N+LH I  L+++ +  +++P D++
Sbjct: 105 GSIMRDNVLHEIEILNQWIMNNISIPTDDL 134


>AC006630-8|AAK68330.1|  232|Caenorhabditis elegans Hypothetical
           protein F14H12.8 protein.
          Length = 232

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 15/68 (22%), Positives = 32/68 (47%)

Query: 115 ITSIYEWKNEINEDKETLLMIKTRTSQVDKLTEYVRSNHPYEVCEVISVPIKNGNPPYLK 174
           I +I  +K    +++E ++ +K R    +    Y+      ++     +P K+G P Y++
Sbjct: 163 IATIILYKAAHRDEQEIVINVKNRHELENAQLGYIDVMENGQIHRFAIIPSKDGLPLYIR 222

Query: 175 WIGDIVPE 182
           +  D V E
Sbjct: 223 FFLDTVTE 230


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.314    0.133    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,165,998
Number of Sequences: 27539
Number of extensions: 148898
Number of successful extensions: 290
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 286
Number of HSP's gapped (non-prelim): 6
length of query: 182
length of database: 12,573,161
effective HSP length: 77
effective length of query: 105
effective length of database: 10,452,658
effective search space: 1097529090
effective search space used: 1097529090
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 57 (27.1 bits)