GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002398-TA|BGIBMGA002398-PA|IPR004323|CutA1 divalent ion
tolerance protein
         (182 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   4.1  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   4.1  

>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 8/26 (30%), Positives = 15/26 (57%)

Query: 53  DSKVTVDLRIGSLSHQNILHHINFLD 78
           D+   +D+   S++ Q  L H +FL+
Sbjct: 513 DNTKPIDMEYSSVAQQQFLPHDDFLE 538



 Score = 20.6 bits (41), Expect = 9.4
 Identities = 9/25 (36%), Positives = 16/25 (64%)

Query: 5   SSVGGDVESSSIISEREDVQARRDG 29
           ++V   V+SSSI+S  +  + +R G
Sbjct: 379 AAVAAAVQSSSIVSSPDSARHQRIG 403


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 9/16 (56%), Positives = 11/16 (68%)

Query: 123 NEINEDKETLLMIKTR 138
           N  NED E L+M+K R
Sbjct: 645 NRHNEDMEKLMMLKHR 660


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.314    0.133    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 47,686
Number of Sequences: 429
Number of extensions: 1700
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 182
length of database: 140,377
effective HSP length: 54
effective length of query: 128
effective length of database: 117,211
effective search space: 15003008
effective search space used: 15003008
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)
S2: 41 (20.6 bits)