GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002397-TA|BGIBMGA002397-PA|undefined
         (264 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    26   0.33 
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    26   0.33 
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           26   0.33 
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    24   1.4  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    23   1.8  
AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory recept...    22   4.1  

>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 25.8 bits (54), Expect = 0.33
 Identities = 14/42 (33%), Positives = 22/42 (52%)

Query: 28  EPNRMSERSIHNTDHNQRLQSRSSTKIEEASRTENGTFKILN 69
           E  R++ER I     N+R++++  TK  E S T    F  L+
Sbjct: 218 ESLRLTERQIKIWFQNRRMKAKKDTKFTEQSVTSTFDFLSLH 259


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
           transcription factor Fushitarazu protein.
          Length = 290

 Score = 25.8 bits (54), Expect = 0.33
 Identities = 14/42 (33%), Positives = 22/42 (52%)

Query: 28  EPNRMSERSIHNTDHNQRLQSRSSTKIEEASRTENGTFKILN 69
           E  R++ER I     N+R++++  TK  E S T    F  L+
Sbjct: 218 ESLRLTERQIKIWFQNRRMKAKKDTKFTEQSVTSTFDFLSLH 259


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 25.8 bits (54), Expect = 0.33
 Identities = 14/42 (33%), Positives = 22/42 (52%)

Query: 28  EPNRMSERSIHNTDHNQRLQSRSSTKIEEASRTENGTFKILN 69
           E  R++ER I     N+R++++  TK  E S T    F  L+
Sbjct: 218 ESLRLTERQIKIWFQNRRMKAKKDTKFTEQSVTSTFDFLSLH 259


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 13/50 (26%), Positives = 23/50 (46%)

Query: 22  QKYLADEPNRMSERSIHNTDHNQRLQSRSSTKIEEASRTENGTFKILNKP 71
           Q+Y  D P+ M   +    + +Q     +S K++ A+ T+NG       P
Sbjct: 106 QEYRPDSPSSMHMANTAAPNGHQTQVVYASCKLQAAAVTQNGVLGPTGSP 155


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 13/50 (26%), Positives = 22/50 (44%)

Query: 22  QKYLADEPNRMSERSIHNTDHNQRLQSRSSTKIEEASRTENGTFKILNKP 71
           Q+Y  D P+ M   +    + +Q      S K++ A+ T+NG       P
Sbjct: 108 QEYRPDSPSSMHMANTAAPNGHQTQVVYDSCKLQAAAVTQNGVLGPTGSP 157


>AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory receptor
           candidate 13 protein.
          Length = 390

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 8/28 (28%), Positives = 16/28 (57%)

Query: 219 MENNYNPKCVQKFIFRKMKILSESGEMI 246
           +EN+    CV     +K+K L + G+++
Sbjct: 64  LENSSEENCVSMSNLKKLKFLLKLGQLL 91


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.317    0.133    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,017
Number of Sequences: 317
Number of extensions: 2961
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 264
length of database: 114,650
effective HSP length: 56
effective length of query: 208
effective length of database: 96,898
effective search space: 20154784
effective search space used: 20154784
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 42 (21.0 bits)