Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002397-TA|BGIBMGA002397-PA|undefined
(264 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr 1||... 30 0.40
SPAC19A8.07c |||U3 snoRNP-associated protein Imp4 |Schizosacchar... 29 0.69
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos... 27 2.8
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 27 2.8
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 27 3.7
SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces pom... 27 3.7
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 27 3.7
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual 26 4.9
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ... 26 4.9
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp... 26 6.4
SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex ... 26 6.4
SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces po... 26 6.4
SPBC776.16 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 6.4
SPBC887.14c |pfh1|pif1|pif1 helicase homolog Pfh1|Schizosaccharo... 25 8.5
>SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 469
Score = 29.9 bits (64), Expect = 0.40
Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 2/97 (2%)
Query: 148 LPSIPDIAQRA-GSFEDSYELCDFRVQIMTPLAAQSDDLKWYHVLNFNENPLQGFRVEIC 206
+P++ D + R+ GS DS+ D QI AA S++ + N V I
Sbjct: 10 MPTVKDDSTRSRGSDVDSFTSTDNVTQINVE-AAISENKNEEKPIQDNSEQEFNPHVSII 68
Query: 207 NTTSTGCAKFVTMENNYNPKCVQKFIFRKMKILSESG 243
G F ++ N ++ +CV++ + +L ESG
Sbjct: 69 QRQLNGYVGFASLPNQWHRRCVRQGFNFNVLVLGESG 105
>SPAC19A8.07c |||U3 snoRNP-associated protein Imp4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 289
Score = 29.1 bits (62), Expect = 0.69
Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 7/80 (8%)
Query: 102 PYVPEIPESCKKIGICDKIPN-------YPREQVEKIVAKLGEKTEFQFDKLDLPSIPDI 154
PY P + S + + IPN YP E + +KLG++ + L P D
Sbjct: 156 PYGPTLSFSLHNVVLRHDIPNTGTMSEAYPHLIFENLTSKLGKRVKTALSALFPPDPKDT 215
Query: 155 AQRAGSFEDSYELCDFRVQI 174
R +F ++ + FR I
Sbjct: 216 TPRVVTFANTDDYISFRHHI 235
>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
Length = 953
Score = 27.1 bits (57), Expect = 2.8
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Query: 30 NRMSERSIHNTDHNQRLQSRSSTKIEEASRTENGTFKILNKPFSIHR 76
N RS H QRLQ ST +E R ++ T K N P + +
Sbjct: 742 NATHARSTSQVSHTQRLQQSISTSLE---RVKSNTKKESNSPRQVSK 785
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 27.1 bits (57), Expect = 2.8
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 9 RQNDQQDSPHSHPQKYLADEPNRMSERSIHNTDHNQRLQSRSSTKIEEASRT-ENGTFKI 67
R+N++ S + L DE ++SER LQ R T EE ++ E+ T K
Sbjct: 588 RENEESISLFKEEVEKLTDEITQLSERYNDKCHEFDELQKRLQTLEEENNKAKEDSTSKT 647
Query: 68 LN 69
N
Sbjct: 648 SN 649
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 26.6 bits (56), Expect = 3.7
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Query: 1 MSISAYKYR-QNDQQDSPHSHPQKYLADEPNRMSERSIHNTDHNQRLQSRSSTKIEEASR 59
M I +YR Q + D H K++ D+ N+MS + N +Q Q S E
Sbjct: 927 MEIGGIRYRIQKSKVDDLHEQ-LKFVKDKLNKMSFKKKKNEQRSQSFQVELSNLTSEYDT 985
Query: 60 T 60
T
Sbjct: 986 T 986
>SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 577
Score = 26.6 bits (56), Expect = 3.7
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
Query: 104 VPEIPESCKKIGICDKIPNYPREQVEKIVAKLGEKTEFQFDKLDLPSIPDIA 155
VPE K+I CDK P P + + G++ F+ K PSI IA
Sbjct: 514 VPEYMRLAKRIATCDK-PEDPHQ----FKLQSGDQNTFRISKKKKPSICPIA 560
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 26.6 bits (56), Expect = 3.7
Identities = 14/62 (22%), Positives = 28/62 (45%)
Query: 8 YRQNDQQDSPHSHPQKYLADEPNRMSERSIHNTDHNQRLQSRSSTKIEEASRTENGTFKI 67
+ +N+ Q SPHSH ++D + I +T+ + ++ ++ + EN I
Sbjct: 163 FSRNETQSSPHSHSASIISDGSDMDIASPIRSTESDMVSEALNAGHPPPSLYPENDDLSI 222
Query: 68 LN 69
N
Sbjct: 223 QN 224
>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
Length = 706
Score = 26.2 bits (55), Expect = 4.9
Identities = 15/51 (29%), Positives = 22/51 (43%)
Query: 9 RQNDQQDSPHSHPQKYLADEPNRMSERSIHNTDHNQRLQSRSSTKIEEASR 59
R +D D + + L+ P+R S + DH R +SRS SR
Sbjct: 163 RFDDDDDDRAPYEESRLSRAPSRASRYDDDDRDHRSRRRSRSRRPGRSRSR 213
>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 965
Score = 26.2 bits (55), Expect = 4.9
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 27 DEPNRMSERSIHNTDHNQRLQSRSSTKIEEASRTENGTFKIL-NKPFS 73
D P+ + S +NT +Q L RSS+ R +NGT N PFS
Sbjct: 88 DSPSTQNVGSTNNTRASQSLLRRSSSFFRRRHR-KNGTHASTDNNPFS 134
>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
Spt6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1365
Score = 25.8 bits (54), Expect = 6.4
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Query: 1 MSISAYKYRQNDQQDSPHSHPQKYLA---DEPNRMSERSIHNTDHNQRLQSRSSTKIEEA 57
MS+SA+K RQ+ QDS SH L DE R+ + S D L + S + A
Sbjct: 749 MSVSAHKIRQH-VQDSLTSHEPVDLIMVNDEVARLYQNSTRAVDEFPTLPTISCYCVALA 807
Query: 58 SRTENGTFK 66
+N F+
Sbjct: 808 RYVQNPLFE 816
>SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex
subunit |Schizosaccharomyces pombe|chr 2|||Manual
Length = 509
Score = 25.8 bits (54), Expect = 6.4
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 126 EQVEKIVAKLGEKTEFQFDK 145
E++EK+ + EKTE FDK
Sbjct: 483 EEIEKLALLIKEKTEIVFDK 502
>SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 594
Score = 25.8 bits (54), Expect = 6.4
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 187 WYHVLNFNENPLQGFRVEICNTTSTGCAKFVT 218
W +++NFNE L+ + ++ N + F T
Sbjct: 424 WLNIINFNEKNLKFYAKKVANVSDENFPIFAT 455
>SPBC776.16 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 253
Score = 25.8 bits (54), Expect = 6.4
Identities = 18/88 (20%), Positives = 37/88 (42%), Gaps = 2/88 (2%)
Query: 3 ISAYKYRQNDQQDSPHSHPQ--KYLADEPNRMSERSIHNTDHNQRLQSRSSTKIEEASRT 60
I +Y + + S + HP + P ++ + S H +N S S + +ASR
Sbjct: 105 IVSYTFSKTGPTTSKNKHPSHSNTIRSPPYKVKKESCHTEINNVSNVSTESINVIDASRG 164
Query: 61 ENGTFKILNKPFSIHRRFAQTDDSPGDR 88
+ + + S +R F ++S ++
Sbjct: 165 YSPYTSVDSLSVSKNRSFISLEESASNQ 192
>SPBC887.14c |pfh1|pif1|pif1 helicase homolog
Pfh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 805
Score = 25.4 bits (53), Expect = 8.5
Identities = 11/33 (33%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 127 QVEKIVAKLGEKTEFQFDKLDLP--SIPDIAQR 157
Q+EK A++ + F++D LD+ +PD+ Q+
Sbjct: 624 QMEKKDAEMQGRNAFEYDSLDISPFDLPDVKQK 656
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.133 0.396
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,295,164
Number of Sequences: 5004
Number of extensions: 55592
Number of successful extensions: 140
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 134
Number of HSP's gapped (non-prelim): 15
length of query: 264
length of database: 2,362,478
effective HSP length: 71
effective length of query: 193
effective length of database: 2,007,194
effective search space: 387388442
effective search space used: 387388442
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 53 (25.4 bits)
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