GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002397-TA|BGIBMGA002397-PA|undefined
         (264 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0613 + 26617677-26617963,26618726-26618786,26619598-266198...    33   0.24 
02_05_0642 + 30576158-30576289,30576436-30576503,30577167-305774...    31   1.3  
09_01_0077 - 1116676-1116972,1119124-1119246,1119515-1119877,112...    29   3.8  
02_04_0151 - 20240418-20240438,20240608-20240775,20240855-202409...    28   6.7  
02_01_0745 - 5550472-5551053                                           28   6.7  
07_03_0810 - 21674710-21674960,21675318-21675405,21675739-216759...    28   8.9  
05_01_0593 - 5335134-5335808                                           28   8.9  
03_02_0220 - 6531255-6532667                                           28   8.9  

>04_04_0613 +
          26617677-26617963,26618726-26618786,26619598-26619832,
          26619958-26620196,26620493-26620744,26620844-26621024,
          26621810-26621898,26622200-26622273,26622365-26622443
          Length = 498

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 3/58 (5%)

Query: 4  SAYKYRQNDQQDSPHSHPQKYLADEPNRMSERSIHNTDHNQRLQSRSSTKIEEASRTE 61
          S ++  Q+  Q  PH H  +Y+  +P    +++ HN+ H Q L+ R+    E A  +E
Sbjct: 29 SQHQQHQHQHQQPPHPHHHQYVQRQPQ--PQQTPHNSQHQQWLR-RNQIAAEAAGASE 83


>02_05_0642 +
           30576158-30576289,30576436-30576503,30577167-30577487,
           30578318-30579146
          Length = 449

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 2/48 (4%)

Query: 102 PYVPEIPESCKKIGICDKIPNYPREQVEKIVAKLGEKTEFQFDKLDLP 149
           P +P + E C + G+   +P YP ++  K + K+G+      ++ DLP
Sbjct: 239 PRIPALVELCIQAGV--NLPEYPTKRRRKPIIKIGKNEFVDANEDDLP 284


>09_01_0077 -
           1116676-1116972,1119124-1119246,1119515-1119877,
           1120639-1120680
          Length = 274

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 3/51 (5%)

Query: 7   KYRQNDQQDSPHSHPQKYLADEPNRMSERSIHNTDHNQRLQSRSSTKIEEA 57
           K  Q D Q  PH HPQ+ L + P  + ++S+   + +  + + +  ++E+A
Sbjct: 161 KQEQEDHQQQPHPHPQQ-LEEAP--LEDKSMSIIEVHNVMPAETEQQVEDA 208


>02_04_0151 -
           20240418-20240438,20240608-20240775,20240855-20240962,
           20241519-20241605,20241687-20241728,20241875-20241937,
           20242007-20242069,20242129-20242497,20242577-20242669,
           20242746-20242838,20242942-20243145,20243305-20243549,
           20243649-20243808
          Length = 571

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 13/80 (16%)

Query: 1   MSISAYKYRQNDQQDSP------------HSHPQKYLADEPNRMSERSIHNTDHNQRLQS 48
           +S S  KY  +  Q+ P            HS  Q+ +A E  +M  +S  N  H+Q +QS
Sbjct: 438 LSFSTEKYHNDANQEEPHYQEAPPSPWSAHSFRQEEMAKEGQKMFVKSTDNA-HDQVIQS 496

Query: 49  RSSTKIEEASRTENGTFKIL 68
           R  +K    S  E G+  +L
Sbjct: 497 RVRSKKTRPSPMEVGSTVLL 516


>02_01_0745 - 5550472-5551053
          Length = 193

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 12/35 (34%), Positives = 20/35 (57%)

Query: 101 NPYVPEIPESCKKIGICDKIPNYPREQVEKIVAKL 135
           +PY P  P S K + + D+I   P E++++I   L
Sbjct: 49  DPYGPMSPPSQKVVDLADRIAALPPEEIKQIAPAL 83


>07_03_0810 -
           21674710-21674960,21675318-21675405,21675739-21675990,
           21676521-21676685,21677358-21678494
          Length = 630

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 9/23 (39%), Positives = 16/23 (69%)

Query: 106 EIPESCKKIGICDKIPNYPREQV 128
           E+ ++C +I ICD +PN+  E +
Sbjct: 434 EVEDACAEICICDWLPNWRNENI 456


>05_01_0593 - 5335134-5335808
          Length = 224

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 2/49 (4%)

Query: 158 AGSFEDSYELCDFRVQIMTPLAAQSDDLKW--YHVLNFNENPLQGFRVE 204
           AGS  D++ + D R  +  P  A S   +W  + +  F + P  G R+E
Sbjct: 53  AGSGADAHAVVDLRFALQEPTPAASVPWRWLAFSLCRFLDLPADGSRLE 101


>03_02_0220 - 6531255-6532667
          Length = 470

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 84  SPGDRVVFPGLTSRSGVNPYVPEIPESCKKIGICDKIPNYPREQVEKI 131
           SPGD     G+ S  GV+P VP +  S  K+          R+ +EK+
Sbjct: 167 SPGDVCAVLGIMSACGVSPSVPLVVTSVHKLATAGDFVG-ARQLIEKM 213


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.317    0.133    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,630,142
Number of Sequences: 37544
Number of extensions: 311407
Number of successful extensions: 681
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 679
Number of HSP's gapped (non-prelim): 9
length of query: 264
length of database: 14,793,348
effective HSP length: 81
effective length of query: 183
effective length of database: 11,752,284
effective search space: 2150667972
effective search space used: 2150667972
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)