GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002397-TA|BGIBMGA002397-PA|undefined
         (264 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26951| Best HMM Match : CUB (HMM E-Value=0)                         32   0.42 
SB_58074| Best HMM Match : CBM_14 (HMM E-Value=2.7e-14)                32   0.55 
SB_55872| Best HMM Match : SSIII (HMM E-Value=3)                       32   0.55 
SB_44098| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.97 
SB_26286| Best HMM Match : DUF963 (HMM E-Value=0.82)                   31   0.97 
SB_31688| Best HMM Match : WD40 (HMM E-Value=3.3e-10)                  30   2.2  
SB_58035| Best HMM Match : Casein (HMM E-Value=1.9)                    29   3.0  
SB_27053| Best HMM Match : DUF346 (HMM E-Value=3.7)                    29   3.9  
SB_52526| Best HMM Match : LEA_4 (HMM E-Value=0.98)                    29   3.9  
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)                 29   3.9  
SB_28069| Best HMM Match : RVT_1 (HMM E-Value=1.8e-28)                 29   3.9  
SB_8449| Best HMM Match : PAPA-1 (HMM E-Value=7.4)                     29   3.9  
SB_21673| Best HMM Match : Troponin (HMM E-Value=0.34)                 29   5.2  
SB_44720| Best HMM Match : Helicase_C (HMM E-Value=0.59)               28   6.8  
SB_44841| Best HMM Match : 7tm_1 (HMM E-Value=4.79999e-40)             28   9.0  

>SB_26951| Best HMM Match : CUB (HMM E-Value=0)
          Length = 794

 Score = 32.3 bits (70), Expect = 0.42
 Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 4/73 (5%)

Query: 115 GICDKIPNYPREQVEKIVAKLGEKTEFQFDKLD---LPSIPDIAQ-RAGSFEDSYELCDF 170
           G    IPN P E + K+ A  G+   F  D +D   L + P   Q   G + + Y+L + 
Sbjct: 217 GFPSSIPNSPLECIWKVSAPAGQVIRFDMDSVDIDYLKTCPTKLQVVTGGYGNLYDLEEL 276

Query: 171 RVQIMTPLAAQSD 183
           R Q +      SD
Sbjct: 277 RCQKVPSFVTSSD 289


>SB_58074| Best HMM Match : CBM_14 (HMM E-Value=2.7e-14)
          Length = 480

 Score = 31.9 bits (69), Expect = 0.55
 Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 4/77 (5%)

Query: 5   AYKYRQNDQQDSPHSHP---QKYLADEPNRMSERSIH-NTDHNQRLQSRSSTKIEEASRT 60
           AY YR N Q +    HP   +K +  +P RM+ +     T    R+  ++S    +  R 
Sbjct: 28  AYLYRTNKQMNKKQEHPVTQRKQMIYKPGRMTRKPGRLVTRRTSRVTLKTSRVTRKPGRV 87

Query: 61  ENGTFKILNKPFSIHRR 77
              T ++  KP  + R+
Sbjct: 88  TRRTSRVTRKPGRVTRK 104


>SB_55872| Best HMM Match : SSIII (HMM E-Value=3)
          Length = 183

 Score = 31.9 bits (69), Expect = 0.55
 Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 9  RQNDQQDSPHSHPQKYLADEPNRMSERSIHNTDHNQRLQSRSSTKIEEASRTENGTFKIL 68
          R   +   PH+   KYL D+P+++ E    + D  +   S   +  +   + +    K  
Sbjct: 10 RALSKDQDPHNQSGKYL-DQPSQLKEPEYVDEDEEEEEHSDEESTKDRKEKKKKEKEKKP 68

Query: 69 NKPFSIHRRF 78
           K FS+ RRF
Sbjct: 69 KKKFSLDRRF 78


>SB_44098| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 561

 Score = 31.1 bits (67), Expect = 0.97
 Identities = 18/70 (25%), Positives = 35/70 (50%)

Query: 22  QKYLADEPNRMSERSIHNTDHNQRLQSRSSTKIEEASRTENGTFKILNKPFSIHRRFAQT 81
           +K   ++ N+ + +  H+T   Q+ + R+STK  + ++  + T + L K  S  R   + 
Sbjct: 254 EKRSTNDSNKTNTKEKHSTKERQKTKERTSTKERDTNKKCDSTKRDLTKRDSTKRDSTKR 313

Query: 82  DDSPGDRVVF 91
                +RVVF
Sbjct: 314 RVVTMERVVF 323


>SB_26286| Best HMM Match : DUF963 (HMM E-Value=0.82)
          Length = 167

 Score = 31.1 bits (67), Expect = 0.97
 Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 1/65 (1%)

Query: 6   YKYRQNDQQDSPHSHP-QKYLADEPNRMSERSIHNTDHNQRLQSRSSTKIEEASRTENGT 64
           YK++++  + S   +  QK+L +  NR+ +   H T+++ R+    ST +  A+   N  
Sbjct: 50  YKHQKHLTEYSNRIYKHQKHLTEYSNRIYKHQKHITEYSNRIYKHQSTLLNTATEYTNTK 109

Query: 65  FKILN 69
             +LN
Sbjct: 110 STLLN 114


>SB_31688| Best HMM Match : WD40 (HMM E-Value=3.3e-10)
          Length = 841

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 19/81 (23%), Positives = 40/81 (49%), Gaps = 7/81 (8%)

Query: 3   ISAYKYRQNDQQDSPHSHPQ---KYLADEPNRMSERSIHNTDHNQRLQSRSSTKIEEASR 59
           +S Y  RQ++ Q    S+P    + L+ +PN++SE  +     NQ   ++S   +   ++
Sbjct: 139 VSQYILRQSNSQSQSSSNPSSQSEMLSSQPNQLSESYL----SNQSAPNQSENSLSSVNQ 194

Query: 60  TENGTFKILNKPFSIHRRFAQ 80
           ++  +   LN+  +I   F +
Sbjct: 195 SQTASNLSLNQSETIVSNFLE 215


>SB_58035| Best HMM Match : Casein (HMM E-Value=1.9)
          Length = 450

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 15/35 (42%), Positives = 19/35 (54%)

Query: 24  YLADEPNRMSERSIHNTDHNQRLQSRSSTKIEEAS 58
           YL  +P  +++R      HN  LQS  S K EEAS
Sbjct: 217 YLLSQPKILAQRQDTLDKHNSYLQSLLSVKTEEAS 251


>SB_27053| Best HMM Match : DUF346 (HMM E-Value=3.7)
          Length = 161

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 26/106 (24%), Positives = 47/106 (44%), Gaps = 4/106 (3%)

Query: 4   SAYKYRQNDQQDSPHSHPQKYLADEPNRMSERSIHNTDHNQRLQSRSSTKIEEASRT--E 61
           SA+      +QDS +        +E N  S ++   T H     +++ +KI++ S +  +
Sbjct: 58  SAFARSSQPKQDSTYHMADGVEPEEENPFSFKNFVQTKHTDEETTKAESKIKDKSFSGKK 117

Query: 62  NGTFKILNKPFSIHRRFAQTDDSPGDRVVFPGLTSRSGVNPYVPEI 107
             + +  N  F     F   DDS  D++V  G TS + V+    E+
Sbjct: 118 GHSSRGRNNVFVAEVPFPDVDDS--DKMVENGETSLAVVSSKPGEV 161


>SB_52526| Best HMM Match : LEA_4 (HMM E-Value=0.98)
          Length = 243

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 36/148 (24%), Positives = 58/148 (39%), Gaps = 10/148 (6%)

Query: 12  DQQDSPHSHPQK--YLADEPNRMSERSIHNTDHNQRLQSRSSTKIE-EASRTENGTFKIL 68
           D+ D P     K    +D+P   +++    TD       +   K + +  +T+    K  
Sbjct: 50  DKTDKPGDKTDKPGEKSDKPGDKTDKPGDKTDKPGDKTDKPGDKTDNQGDKTDKPGDKT- 108

Query: 69  NKPFSIHRRFAQTDDSPGDRVVFPG-LTSRSGVNPYVP--EIPESCKKIGICDKIPNYPR 125
           +KP     +     D PGD+   PG  T   G     P  +  + C K        + P 
Sbjct: 109 DKPGDKTDKPGDKTDKPGDKTDKPGDKTDNQGDKTDKPGDKTDKPCDKTDKPGDKTDKPC 168

Query: 126 EQVEKI---VAKLGEKTEFQFDKLDLPS 150
           ++ +K      KLG+KT+   DK D PS
Sbjct: 169 DKTDKPGDKTDKLGDKTDKPADKTDKPS 196


>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
          Length = 921

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 6/68 (8%)

Query: 24  YLADEPNRMSERSIHNTDHNQRLQS---RSSTKIEEASRTENGTFKILNKPFSI--HRRF 78
           YL D P+R+S   + + D +++       S+      + T+ GT K+LN  + +      
Sbjct: 368 YLNDRPSRLSVAEVEHLDADEKTTQPYFPSNNNQNTQTNTQQGT-KVLNNNYEVISSETV 426

Query: 79  AQTDDSPG 86
           +  +DSPG
Sbjct: 427 SSKNDSPG 434


>SB_28069| Best HMM Match : RVT_1 (HMM E-Value=1.8e-28)
          Length = 593

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 13/62 (20%)

Query: 97  RSGVNPYVPEIPESCKKIGIC----------DKIPNYPREQVEKIVAKLGEKTEFQFDKL 146
           R+G  P VP I +S + I IC           K+ NYP  + E ++A+LG     QF KL
Sbjct: 421 RNGQPPIVP-IVKSDESIRICGDFKVTLNQVSKLDNYPIPKTEDLLAQLGGGV--QFTKL 477

Query: 147 DL 148
           DL
Sbjct: 478 DL 479


>SB_8449| Best HMM Match : PAPA-1 (HMM E-Value=7.4)
          Length = 181

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 7/68 (10%)

Query: 9   RQNDQQDSPHSHPQKYLADEPNRMSERSIHNTDHNQRLQSRSST-----KIEEASRTENG 63
           R N Q   P +   + + D   + +ER+ +NTD+    Q+   T     KI++  +TE  
Sbjct: 42  RPNAQSTRPTTDLTRKVQDR--QQTERTEYNTDNRPNAQNTRPTTDRTHKIQDRQQTERA 99

Query: 64  TFKILNKP 71
            +K  N+P
Sbjct: 100 KYKTDNRP 107


>SB_21673| Best HMM Match : Troponin (HMM E-Value=0.34)
          Length = 337

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 80  QTDDSPGDRVVFPGLTSRSGVNPYVPEIPESCKKIGICDKIPNYPREQVEKIVAKLGEK 138
           Q DDS G + V  G +  SG +P +P+  + C +      +P      V++ +  L EK
Sbjct: 40  QVDDSSGKKKVPIGRSISSGASPSIPKDDQKCPEAN-GPMVPEKALRSVQESLHDLEEK 97


>SB_44720| Best HMM Match : Helicase_C (HMM E-Value=0.59)
          Length = 625

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 16  SPHSHPQKYLADEPNRMSERSIHNTDHNQRLQSRSSTKIEEASRTENGTFKILNKPFSIH 75
           +P   PQ  L  E  + SE S+ +T ++  L+  SS  + +A     GT    +KP  + 
Sbjct: 474 APPPRPQGNLL-ESLKSSEGSMESTSNDSPLRKHSSPSLSDAIMRTKGTTNTSHKPKKVF 532

Query: 76  R 76
           +
Sbjct: 533 K 533


>SB_44841| Best HMM Match : 7tm_1 (HMM E-Value=4.79999e-40)
          Length = 1198

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 5/99 (5%)

Query: 7   KYRQNDQQDSPHSHPQKYLADEPNRMSERSIHNTDHNQRLQSRSSTKIEEASRTENGTFK 66
           K ++ +  ++ HS+P   L    N+ +E + + T  N+R+ +     I      E+   K
Sbjct: 289 KRKKENAMNNFHSNPAINLGLSTNKNTEPAENITRRNERMSNVQLPIILLEHPEEDPNKK 348

Query: 67  ILNKPFSIHRRFAQTDDSPGDRVVFPGLTSRSGVNPYVP 105
           +L       RRF  + DSP +  +F  L     +N   P
Sbjct: 349 VL-----FGRRFHDSGDSPDEFPLFDSLRRPGALNAGSP 382


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.317    0.133    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,362,350
Number of Sequences: 59808
Number of extensions: 391590
Number of successful extensions: 1010
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 995
Number of HSP's gapped (non-prelim): 24
length of query: 264
length of database: 16,821,457
effective HSP length: 81
effective length of query: 183
effective length of database: 11,977,009
effective search space: 2191792647
effective search space used: 2191792647
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)