GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002397-TA|BGIBMGA002397-PA|undefined
         (264 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated p...    29   3.4  
U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin pr...    29   3.4  
AF038615-4|AAB94143.1|  743|Caenorhabditis elegans Hypothetical ...    29   3.4  
AC084197-14|AAM44396.1|  526|Caenorhabditis elegans Hypothetical...    29   4.5  
Z48007-1|CAA88052.1| 1140|Caenorhabditis elegans Hypothetical pr...    28   5.9  
AF039037-5|AAC48228.3|  714|Caenorhabditis elegans Temporarily a...    28   5.9  
U80848-3|AAB37988.1| 2098|Caenorhabditis elegans Heavy chain, un...    28   7.9  
AJ297847-1|CAC16732.1|  619|Caenorhabditis elegans FOG-1 protein...    28   7.9  
AJ297846-1|CAC16731.1|  619|Caenorhabditis elegans FOG-1 protein...    28   7.9  
AC024810-12|AAK68519.1|  619|Caenorhabditis elegans Feminization...    28   7.9  

>U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated
            protein 44, isoform f protein.
          Length = 6994

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/52 (28%), Positives = 24/52 (46%)

Query: 7    KYRQNDQQDSPHSHPQKYLADEPNRMSERSIHNTDHNQRLQSRSSTKIEEAS 58
            ++   DQ++   S   K   ++    SERSI +T+H Q     S   +E  S
Sbjct: 2438 EFYDEDQEEQASSRATKERIEQSPVASERSIVSTEHRQSPTQESEQSLEPTS 2489


>U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin
            protein.
          Length = 6994

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/52 (28%), Positives = 24/52 (46%)

Query: 7    KYRQNDQQDSPHSHPQKYLADEPNRMSERSIHNTDHNQRLQSRSSTKIEEAS 58
            ++   DQ++   S   K   ++    SERSI +T+H Q     S   +E  S
Sbjct: 2438 EFYDEDQEEQASSRATKERIEQSPVASERSIVSTEHRQSPTQESEQSLEPTS 2489


>AF038615-4|AAB94143.1|  743|Caenorhabditis elegans Hypothetical
           protein R02D3.2 protein.
          Length = 743

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/46 (32%), Positives = 28/46 (60%)

Query: 129 EKIVAKLGEKTEFQFDKLDLPSIPDIAQRAGSFEDSYELCDFRVQI 174
           + +V K  +K+   ++ L LPS  DI  RAG ++ +Y L ++ +Q+
Sbjct: 99  QDLVRKALDKSNPIWELLTLPSRMDICIRAGYYDLAYTLTNYGLQL 144


>AC084197-14|AAM44396.1|  526|Caenorhabditis elegans Hypothetical
           protein Y73B6BL.5b protein.
          Length = 526

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 4/86 (4%)

Query: 2   SISAYKYRQNDQQDSP----HSHPQKYLADEPNRMSERSIHNTDHNQRLQSRSSTKIEEA 57
           +IS  +  Q+ +Q SP    H  P+K   D  +R ++RS +     Q     SST    +
Sbjct: 56  AISPVRRSQDHRQRSPEVRRHRSPEKESKDAVDRDADRSNNIAARIQAPVVSSSTHHHHS 115

Query: 58  SRTENGTFKILNKPFSIHRRFAQTDD 83
           +R EN     + +P + +R    + D
Sbjct: 116 NRHENRKSTAVKRPAADNRPMTYSTD 141


>Z48007-1|CAA88052.1| 1140|Caenorhabditis elegans Hypothetical
           protein R134.1 protein.
          Length = 1140

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%)

Query: 93  GLTSRSGVNPYVPEIPESCKKIGICD--KIPNYPREQVE 129
           GL +R+G N     +  S K +  C   KIP+ PRE+VE
Sbjct: 953 GLPTRNGFNHIKQIVDMSLKFMDYCKNFKIPHLPRERVE 991


>AF039037-5|AAC48228.3|  714|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 40 protein.
          Length = 714

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/36 (38%), Positives = 19/36 (52%)

Query: 153 DIAQRAGSFEDSYELCDFRVQIMTPLAAQSDDLKWY 188
           DI  R  SF DS +L    V I  P + +++DL  Y
Sbjct: 162 DIKMRPNSFNDSCQLPQIGVDICLPWSCRNEDLTDY 197


>U80848-3|AAB37988.1| 2098|Caenorhabditis elegans Heavy chain,
            unconventional myosinprotein 6 protein.
          Length = 2098

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/20 (50%), Positives = 13/20 (65%)

Query: 23   KYLADEPNRMSERSIHNTDH 42
            KY+ DEP++ S    H TDH
Sbjct: 1656 KYMGDEPSKRSRLGTHLTDH 1675


>AJ297847-1|CAC16732.1|  619|Caenorhabditis elegans FOG-1 protein
           protein.
          Length = 619

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 5/76 (6%)

Query: 2   SISAYKYRQNDQQDSPHSHPQK--YLADEPNRMSERSIHNTDHNQRLQSRS---STKIEE 56
           S+SAY +  N+QQ    +H  +     D+ N  +   +H    N R ++     S K+  
Sbjct: 150 SMSAYNFHNNNQQQRREAHVSRDGKSFDQGNIYTAEDVHTVVKNHRNENNQRVVSNKVFV 209

Query: 57  ASRTENGTFKILNKPF 72
              +     KI+NK F
Sbjct: 210 GGISHMMNRKIINKFF 225


>AJ297846-1|CAC16731.1|  619|Caenorhabditis elegans FOG-1 protein
           protein.
          Length = 619

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 5/76 (6%)

Query: 2   SISAYKYRQNDQQDSPHSHPQK--YLADEPNRMSERSIHNTDHNQRLQSRS---STKIEE 56
           S+SAY +  N+QQ    +H  +     D+ N  +   +H    N R ++     S K+  
Sbjct: 150 SMSAYNFHNNNQQQRREAHVSRDGKSFDQGNIYTAEDVHTVVKNHRNENNQRVVSNKVFV 209

Query: 57  ASRTENGTFKILNKPF 72
              +     KI+NK F
Sbjct: 210 GGISHMMNRKIINKFF 225


>AC024810-12|AAK68519.1|  619|Caenorhabditis elegans Feminization of
           germline protein1, isoform b protein.
          Length = 619

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 5/76 (6%)

Query: 2   SISAYKYRQNDQQDSPHSHPQK--YLADEPNRMSERSIHNTDHNQRLQSRS---STKIEE 56
           S+SAY +  N+QQ    +H  +     D+ N  +   +H    N R ++     S K+  
Sbjct: 150 SMSAYNFHNNNQQQRREAHVSRDGKSFDQGNIYTAEDVHTVVKNHRNENNQRVVSNKVFV 209

Query: 57  ASRTENGTFKILNKPF 72
              +     KI+NK F
Sbjct: 210 GGISHMMNRKIINKFF 225


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.317    0.133    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,031,977
Number of Sequences: 27539
Number of extensions: 307886
Number of successful extensions: 870
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 862
Number of HSP's gapped (non-prelim): 12
length of query: 264
length of database: 12,573,161
effective HSP length: 80
effective length of query: 184
effective length of database: 10,370,041
effective search space: 1908087544
effective search space used: 1908087544
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)