GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002396-TA|BGIBMGA002396-PA|undefined
         (218 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       25   0.61 
DQ855489-1|ABH88176.1|  122|Tribolium castaneum chemosensory pro...    21   7.6  
AJ973444-1|CAJ01491.1|  122|Tribolium castaneum hypothetical pro...    21   7.6  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    21   10.0 

>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 24.6 bits (51), Expect = 0.61
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 5/39 (12%)

Query: 92  DTEYEPQPNLVIEAFGDRQG-----DPDAEDNCPTDITF 125
           D E  P P+++I+  G R+G      P AE+  P  + F
Sbjct: 318 DEEGNPCPDIIIDVHGTRRGPKIKTQPKAEEAKPETLPF 356


>DQ855489-1|ABH88176.1|  122|Tribolium castaneum chemosensory
           protein 2 protein.
          Length = 122

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 5/14 (35%), Positives = 11/14 (78%)

Query: 129 FLVRSRSGDWRTVV 142
           FL++ R+ DW+ ++
Sbjct: 89  FLIKERNSDWQQLI 102


>AJ973444-1|CAJ01491.1|  122|Tribolium castaneum hypothetical
           protein protein.
          Length = 122

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 5/14 (35%), Positives = 11/14 (78%)

Query: 129 FLVRSRSGDWRTVV 142
           FL++ R+ DW+ ++
Sbjct: 89  FLIKERNSDWQQLI 102


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 7/25 (28%), Positives = 11/25 (44%)

Query: 164 TCFVDLNLTPDIVTFCKQKYSVWEF 188
           TC +D+   P     C  K+  W +
Sbjct: 127 TCKIDITWFPFDDQHCDMKFGSWTY 151


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.319    0.138    0.437 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 61,956
Number of Sequences: 317
Number of extensions: 3005
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 218
length of database: 114,650
effective HSP length: 54
effective length of query: 164
effective length of database: 97,532
effective search space: 15995248
effective search space used: 15995248
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 41 (20.6 bits)