GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002396-TA|BGIBMGA002396-PA|undefined
         (218 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    26   3.7  
SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces p...    26   4.9  
SPAC13F5.03c |||glycerol dehydrogenase |Schizosaccharomyces pomb...    26   4.9  
SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase |Schizosaccharo...    25   6.5  
SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar...    25   8.6  
SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit C...    25   8.6  

>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1822

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 2/73 (2%)

Query: 86   FNDMFKDTEYEPQPNLVIEAFGDRQGDPDAEDNCPTDITFEPLFLVRSRSGDWRTVVQAP 145
            F ++FK+T   P   L++E F + QG P   +N  T ++ +    +   S    T   +P
Sbjct: 1555 FIELFKETT--PHQLLLLETFSNGQGAPVYSENENTQLSHKRGGSLPETSRSISTSSISP 1612

Query: 146  EKNYLQKVRLETC 158
            EK    +  +  C
Sbjct: 1613 EKQMEFRSMIRKC 1625


>SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 252

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 11/28 (39%), Positives = 17/28 (60%)

Query: 165 CFVDLNLTPDIVTFCKQKYSVWEFLVDD 192
           CF+  +L PD+  F KQ  S+  +L +D
Sbjct: 114 CFIVKDLVPDLTYFYKQYKSIEPWLQND 141


>SPAC13F5.03c |||glycerol dehydrogenase |Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 450

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 11/81 (13%)

Query: 5  CDVTPRAYSQTLHQRNISICALSFAKELDRKQREKDYVPLKYPGPIQDVGNRYGSPDSGV 64
          C  TPR    +L  RN  + AL+ +  + ++  ++ Y P++   P   VG  +       
Sbjct: 7  CAATPRFPLVSLAHRNSKVFALASSNAVAQRWGKRFYAPIETETP-HKVGVEF------- 58

Query: 65 PEECRDKNFCTIKPPDYPQAR 85
           EE +D+ F +  P  Y Q R
Sbjct: 59 -EESKDRIFTS--PQKYVQGR 76


>SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 571

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 9/27 (33%), Positives = 15/27 (55%)

Query: 181 QKYSVWEFLVDDGKNGTETIQSELPIC 207
           +K S +  ++D+G +  E I   L IC
Sbjct: 133 KKVSAYSIMIDNGNDAAEKIDEALSIC 159


>SPAC25B8.04c |||mitochondrial splicing suppressor
          |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 378

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 10/33 (30%), Positives = 15/33 (45%)

Query: 36 QREKDYVPLKYPGPIQDVGNRYGSPDSGVPEEC 68
          +R  +++   Y  PI      Y  P+SG P  C
Sbjct: 30 RRRSEHIKQVYRCPISGKSVEYECPESGFPTHC 62


>SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit
           Cwp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 13/42 (30%), Positives = 18/42 (42%)

Query: 148 NYLQKVRLETCKQVGGTCFVDLNLTPDIVTFCKQKYSVWEFL 189
           N+   V  ET K V  +   +LN   D + F     S W +L
Sbjct: 183 NHRFYVLFETSKVVSWSLEEELNYLKDKILFAPDNQSAWNYL 224


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.138    0.437 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,172,557
Number of Sequences: 5004
Number of extensions: 54538
Number of successful extensions: 88
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 83
Number of HSP's gapped (non-prelim): 6
length of query: 218
length of database: 2,362,478
effective HSP length: 70
effective length of query: 148
effective length of database: 2,012,198
effective search space: 297805304
effective search space used: 297805304
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 52 (25.0 bits)