GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002396-TA|BGIBMGA002396-PA|undefined
         (218 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0121 - 13673432-13673446,13673564-13673791                       29   3.9  
04_04_0838 - 28550036-28550237,28550595-28550676,28550972-285510...    28   6.8  
02_02_0540 - 11334744-11334832,11335445-11335494,11335574-11336805     28   6.8  

>07_03_0121 - 13673432-13673446,13673564-13673791
          Length = 80

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 11/37 (29%), Positives = 16/37 (43%)

Query: 47 PGPIQDVGNRYGSPDSGVPEECRDKNFCTIKPPDYPQ 83
          P P+ D  +  G   SG P  C     C ++ P  P+
Sbjct: 3  PAPLCDAAHPAGGRGSGAPPGCERLRSCALRRPSCPE 39


>04_04_0838 -
           28550036-28550237,28550595-28550676,28550972-28551011,
           28551342-28551416,28551448-28551543,28551710-28551805,
           28551897-28551974,28552064-28552170,28552450-28552477,
           28552777-28552898,28554106-28554172,28554336-28554508,
           28554763-28554846,28555616-28555733,28556093-28556164,
           28557026-28557118,28557484-28557636,28558000-28558086,
           28559436-28559528,28560416-28560643,28561106-28561207,
           28561390-28561596,28561798-28561846,28562385-28562537,
           28562649-28562712,28562905-28563175,28564008-28564072,
           28564184-28564337
          Length = 1052

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 2/34 (5%)

Query: 64  VPEECRDKNFCTIKPPDYPQ--ARFNDMFKDTEY 95
           VP  CRD+N+  I   + P     F+DM K T +
Sbjct: 951 VPNGCRDENYDDISTKNAPSKAPMFSDMLKSTSF 984


>02_02_0540 - 11334744-11334832,11335445-11335494,11335574-11336805
          Length = 456

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)

Query: 183 YSVWEFLVDDGKNGTETIQSELPICCSC 210
           Y++ EFL +DG NG E  +  L   C C
Sbjct: 182 YNLHEFLPEDGGNGREYYRLALGYKCKC 209


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.319    0.138    0.437 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,596,658
Number of Sequences: 37544
Number of extensions: 358811
Number of successful extensions: 528
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 526
Number of HSP's gapped (non-prelim): 3
length of query: 218
length of database: 14,793,348
effective HSP length: 79
effective length of query: 139
effective length of database: 11,827,372
effective search space: 1644004708
effective search space used: 1644004708
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 58 (27.5 bits)