GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002396-TA|BGIBMGA002396-PA|undefined
         (218 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93396-2|CAB07711.1|  343|Caenorhabditis elegans Hypothetical pr...    31   0.64 
AC006638-8|AAK85487.2|  644|Caenorhabditis elegans Hypothetical ...    31   0.64 
AY825249-1|AAX24101.1|  728|Caenorhabditis elegans sodium-couple...    27   7.9  
AL110485-25|CAB60372.4|  728|Caenorhabditis elegans Hypothetical...    27   7.9  

>Z93396-2|CAB07711.1|  343|Caenorhabditis elegans Hypothetical
           protein ZC15.3 protein.
          Length = 343

 Score = 31.1 bits (67), Expect = 0.64
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 9   PRAYSQTLHQRNISICALSFAKELDRK--QREKDYVPLKYPGPIQDVGNRYG 58
           P   +QT H     +   S   +L+RK    ++DY P    GPI+   NRYG
Sbjct: 291 PGEIAQTHHNATFCLMLTSKQYKLERKGSPSDRDYSPKGRRGPIRSRHNRYG 342


>AC006638-8|AAK85487.2|  644|Caenorhabditis elegans Hypothetical
           protein F41G4.7 protein.
          Length = 644

 Score = 31.1 bits (67), Expect = 0.64
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 9   PRAYSQTLHQRNISICALSFAKELDRK--QREKDYVPLKYPGPIQDVGNRYG 58
           P   +QT H     +   S   +L+RK    ++DY P    GPI+   NRYG
Sbjct: 583 PGEIAQTHHNATFCLMLTSKQYKLERKGSPSDRDYSPKGRRGPIRSRHNRYG 634


>AY825249-1|AAX24101.1|  728|Caenorhabditis elegans sodium-coupled
           neutral amino acidtransporter protein.
          Length = 728

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 10/40 (25%), Positives = 18/40 (45%)

Query: 175 IVTFCKQKYSVWEFLVDDGKNGTETIQSELPICCSCHYKI 214
           ++  C+  +++W    +D  NGT  I       C  H K+
Sbjct: 190 MINICRGHFALWSHCNNDWNNGTSCITMADQYLCKNHTKV 229


>AL110485-25|CAB60372.4|  728|Caenorhabditis elegans Hypothetical
           protein Y46G5A.30 protein.
          Length = 728

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 10/40 (25%), Positives = 18/40 (45%)

Query: 175 IVTFCKQKYSVWEFLVDDGKNGTETIQSELPICCSCHYKI 214
           ++  C+  +++W    +D  NGT  I       C  H K+
Sbjct: 190 MINICRGHFALWSHCNNDWNNGTSCITMADQYLCKNHTKV 229


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.319    0.138    0.437 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,648,407
Number of Sequences: 27539
Number of extensions: 325340
Number of successful extensions: 507
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 505
Number of HSP's gapped (non-prelim): 4
length of query: 218
length of database: 12,573,161
effective HSP length: 79
effective length of query: 139
effective length of database: 10,397,580
effective search space: 1445263620
effective search space used: 1445263620
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 58 (27.5 bits)