GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002396-TA|BGIBMGA002396-PA|undefined
         (218 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.9  
X02007-1|CAA26038.1|   70|Apis mellifera prepromelittin protein.       21   6.8  
AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding prote...    21   6.8  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   6.8  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    21   9.0  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    21   9.0  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   9.0  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   9.0  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   9.0  

>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 3/42 (7%)

Query: 162 GGTCFVDLNLTPDIVTFCKQKYSVWEFLVDDGKNGTETIQSE 203
           G TC +D+   P     C  K+  W +   DG      + SE
Sbjct: 108 GSTCKIDIAWFPFDDQHCDMKFGSWTY---DGNQVDLVLSSE 146


>X02007-1|CAA26038.1|   70|Apis mellifera prepromelittin protein.
          Length = 70

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 9/20 (45%), Positives = 12/20 (60%)

Query: 96  EPQPNLVIEAFGDRQGDPDA 115
           EP+P    EA  D + DP+A
Sbjct: 24  EPEPAPEPEAEADAEADPEA 43


>AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding protein
           ASP5 protein.
          Length = 143

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 11/36 (30%), Positives = 17/36 (47%)

Query: 179 CKQKYSVWEFLVDDGKNGTETIQSELPICCSCHYKI 214
           C QK ++ E LVD  + G      +L    +C  K+
Sbjct: 40  CLQKIAITEELVDGMRRGEFPDDHDLQCYTTCIMKL 75


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 9/39 (23%), Positives = 20/39 (51%)

Query: 31  ELDRKQREKDYVPLKYPGPIQDVGNRYGSPDSGVPEECR 69
           ELD+  +EK    L+   P++++       ++  PE+ +
Sbjct: 499 ELDKMDKEKKLEDLEMGTPLENILESCQQDETHAPEKTK 537


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 3/40 (7%)

Query: 164 TCFVDLNLTPDIVTFCKQKYSVWEFLVDDGKNGTETIQSE 203
           TC +D+   P     C  K+  W +   DG      + SE
Sbjct: 110 TCKIDITWFPFDDQHCDMKFGSWTY---DGNQVDLVLSSE 146


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 3/40 (7%)

Query: 164 TCFVDLNLTPDIVTFCKQKYSVWEFLVDDGKNGTETIQSE 203
           TC +D+   P     C  K+  W +   DG      + SE
Sbjct: 110 TCKIDITWFPFDDQHCDMKFGSWTY---DGNQVDLVLSSE 146


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 3/40 (7%)

Query: 164 TCFVDLNLTPDIVTFCKQKYSVWEFLVDDGKNGTETIQSE 203
           TC +D+   P     C  K+  W +   DG      + SE
Sbjct: 178 TCKIDITWFPFDDQHCDMKFGSWTY---DGNQVDLVLSSE 214


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 3/40 (7%)

Query: 164 TCFVDLNLTPDIVTFCKQKYSVWEFLVDDGKNGTETIQSE 203
           TC +D+   P     C  K+  W +   DG      + SE
Sbjct: 178 TCKIDITWFPFDDQHCDMKFGSWTY---DGNQVDLVLSSE 214


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 6/19 (31%), Positives = 14/19 (73%)

Query: 33  DRKQREKDYVPLKYPGPIQ 51
           D + R+K+++P ++P  I+
Sbjct: 644 DLEPRQKEFLPKEFPANIE 662


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.138    0.437 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,530
Number of Sequences: 429
Number of extensions: 4287
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 9
length of query: 218
length of database: 140,377
effective HSP length: 55
effective length of query: 163
effective length of database: 116,782
effective search space: 19035466
effective search space used: 19035466
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 42 (21.0 bits)