GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002395-TA|BGIBMGA002395-PA|undefined
         (180 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.16c |||aromatic ring-opening dioxygenase |Schizosacchar...    32   0.043
SPBC19F8.01c |spn7|SPBC21.08c|septin Spn7|Schizosaccharomyces po...    26   2.8  
SPCC18.17c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    26   3.7  
SPAC1952.17c ||SPAC890.01c|GTPase activating protein|Schizosacch...    26   3.7  
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    25   6.5  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    25   8.6  

>SPBC1709.16c |||aromatic ring-opening dioxygenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 285

 Score = 32.3 bits (70), Expect = 0.043
 Identities = 18/51 (35%), Positives = 27/51 (52%)

Query: 91  YLVPFLFVNHHVWEDSNDLREKTKESCYEEFGLNKLGLSSVCKESYRLNKI 141
           YL+    +N H +ED +   E T    Y+EF L+ L      K++ RLNK+
Sbjct: 183 YLIVSGGLNIHTFEDLSAFNEDTAADGYKEFQLDILKAIETDKQNDRLNKL 233


>SPBC19F8.01c |spn7|SPBC21.08c|septin Spn7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 5/62 (8%)

Query: 79  WITEKTAGTPFLYLVPFLFVNHHVWEDSNDLREKTKESCYEEFGLNKLGLSSVCKESYRL 138
           ++ +  A + FL L   LF++H      + L+  TK++ YE +   KL   S    S  L
Sbjct: 246 FVIDDPAHSDFLNLKTVLFISH-----LDILKSITKQTYYENYRTEKLSNDSPSNTSLSL 300

Query: 139 NK 140
            K
Sbjct: 301 QK 302


>SPCC18.17c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 488

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 14  KILITLISFVKFTVLRIKKPLKYEIEYQEKIDRILTGSKDWKYFDPETYSDEAG 67
           K ++  I+FV    + ++ P  YE    EK   + T ++D+K    ++Y+D  G
Sbjct: 219 KDILLQINFVDVLGIMLEAPFTYEYISSEKTKYLDTIAQDYK-GSADSYTDHIG 271


>SPAC1952.17c ||SPAC890.01c|GTPase activating
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 619

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 3/56 (5%)

Query: 6   SNWVSRMIKILITLISFVKFTVLRIKKPLKYEIEYQEKIDRILTGSKD--WK-YFD 58
           SNW S + K   T  SFV+  ++   + L    E  E  D  L  S D  WK YFD
Sbjct: 56  SNWQSVLEKHRKTYTSFVQELLIDPWRKLTLHEESGENSDHPLNTSDDSKWKEYFD 111


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
           Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 3/36 (8%)

Query: 20  ISFVKFTVLRIK---KPLKYEIEYQEKIDRILTGSK 52
           +S++ +T L I+    PL Y I Y E ++  L GSK
Sbjct: 723 VSWLGYTYLYIRMRRNPLVYGIAYDELVEDPLLGSK 758


>SPAC18G6.05c |||translation elongation regulator Gcn1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 2/56 (3%)

Query: 2   NVLTSNWVSRMIKILITLISFV-KFTVLRIKKPLKYEIEYQEKIDRILTGSKDWKY 56
           N+L SN+V R  + +I + SF  +    R  K LK  I Y+  + R+   S+ W Y
Sbjct: 583 NLLFSNFVERWFQSVIGVFSFASRENSNRALKILKSAILYRPHL-RMSICSQLWNY 637


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.138    0.436 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 933,363
Number of Sequences: 5004
Number of extensions: 41081
Number of successful extensions: 86
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 85
Number of HSP's gapped (non-prelim): 6
length of query: 180
length of database: 2,362,478
effective HSP length: 69
effective length of query: 111
effective length of database: 2,017,202
effective search space: 223909422
effective search space used: 223909422
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 51 (24.6 bits)