GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002395-TA|BGIBMGA002395-PA|undefined
         (180 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0354 - 17104223-17106061,17106770-17106794,17107317-171075...    30   1.2  
03_01_0636 - 4664472-4664588,4664695-4664856,4664984-4665061,466...    29   2.9  
01_05_0799 + 25334460-25334994,25335060-25335236,25335325-253354...    29   2.9  
01_01_0203 - 1756812-1757032,1757646-1757730                           27   6.6  
12_01_0798 + 7314885-7314953,7315324-7315387,7315489-7315677,731...    27   8.7  
11_01_0542 - 4280457-4280984,4281533-4281828,4281918-4282083           27   8.7  
04_03_0935 + 20918617-20919299,20919328-20919627,20919680-209198...    27   8.7  
03_02_0464 - 8683232-8684596                                           27   8.7  

>10_08_0354 -
           17104223-17106061,17106770-17106794,17107317-17107561,
           17108432-17108677
          Length = 784

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 5/66 (7%)

Query: 51  SKDWKYFDPETYSDEAGQN-STGIIGGCHWITEKT-AGTPFLYLVPFLFVNHHVWEDSND 108
           S  W YF P++ ++  G++   GII   H +T++T   TP   L P  F     WE   D
Sbjct: 531 SMAWGYF-PDSTAELPGKSYEGGIITSMHRVTDRTIIETP--ALGPGAFAAVVPWESGRD 587

Query: 109 LREKTK 114
           ++E+ +
Sbjct: 588 MKERMR 593


>03_01_0636 -
           4664472-4664588,4664695-4664856,4664984-4665061,
           4665157-4665221,4665476-4665558,4666052-4666414,
           4666512-4666555,4666632-4666765,4666881-4666917
          Length = 360

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 8/69 (11%)

Query: 17  ITLISFVKFTVLRIKKPLKYEIEYQEKIDRIL-----TGSKDWK-YFDPE--TYSDEAGQ 68
           + + SF ++TV+ + + +K +     KI  +L     TG  + + Y +P     S E GQ
Sbjct: 143 VAVTSFSQYTVVDVNQVVKVDPAVPPKIACLLGCCGGTGEPEIRRYIEPAWGRSSMEVGQ 202

Query: 69  NSTGIIGGC 77
           ++T  +GGC
Sbjct: 203 SATRFVGGC 211


>01_05_0799 +
           25334460-25334994,25335060-25335236,25335325-25335447,
           25335559-25335624,25335717-25336685,25336791-25336912,
           25337156-25337549,25337888-25338009,25338253-25338646,
           25338983-25339104,25339348-25339830,25340291-25340960,
           25341713-25342224,25342484-25342540
          Length = 1581

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 1/67 (1%)

Query: 105 DSNDLREKTKESCYEEFGLNKLGLSSVCKESYRLNKIYFYDPDRNMIYTKKMTIPYCCTC 164
           DS+D   + K+  YE + L+  G++SV  E    + +Y   P ++ +  K     YC   
Sbjct: 291 DSDDEELQNKDDSYESYRLDIKGVNSVDTED-PYDYVYHNLPKKHHVLKKVANCKYCGAI 349

Query: 165 TILKENP 171
               E P
Sbjct: 350 RFQYEPP 356


>01_01_0203 - 1756812-1757032,1757646-1757730
          Length = 101

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 8/22 (36%), Positives = 15/22 (68%)

Query: 159 PYCCTCTILKENPVQDYQCLKT 180
           P C +C ++K +PV+ ++C  T
Sbjct: 69  PVCKSCAVVKTHPVKKFKCTDT 90


>12_01_0798 +
           7314885-7314953,7315324-7315387,7315489-7315677,
           7316430-7316625,7316727-7316953,7317177-7318134,
           7320104-7321307,7321517-7321876,7321965-7323195,
           7323334-7323599,7323738-7326335
          Length = 2453

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 18/44 (40%), Positives = 23/44 (52%)

Query: 2   NVLTSNWVSRMIKILITLISFVKFTVLRIKKPLKYEIEYQEKID 45
           NV  +N  S M KI+ +LISF K TV      L     Y+E +D
Sbjct: 416 NVSRNNQRSEMDKIIWSLISFSKITVPEKYSILIRGNRYKEALD 459


>11_01_0542 - 4280457-4280984,4281533-4281828,4281918-4282083
          Length = 329

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 3/47 (6%)

Query: 45  DRILTGSKDWKYFDPETYSDEAGQNSTGIIGGCHWI---TEKTAGTP 88
           +R + G K+W +F P       GQ      G  +W     +K  G+P
Sbjct: 56  ERAMGGEKEWYFFSPRDRKYPNGQRPNRAAGTGYWKATGADKPVGSP 102


>04_03_0935 +
           20918617-20919299,20919328-20919627,20919680-20919836,
           20921338-20921397,20921554-20921670
          Length = 438

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 11/29 (37%), Positives = 15/29 (51%)

Query: 94  PFLFVNHHVWEDSNDLREKTKESCYEEFG 122
           P  ++ HH W DS D  +   E+ YE  G
Sbjct: 324 PAFWMFHHFWYDSGDDGDDEVETAYESGG 352


>03_02_0464 - 8683232-8684596
          Length = 454

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 8/10 (80%), Positives = 10/10 (100%)

Query: 159 PYCCTCTILK 168
           PYCCTC+IL+
Sbjct: 339 PYCCTCSILR 348


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.321    0.138    0.436 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,388,296
Number of Sequences: 37544
Number of extensions: 218263
Number of successful extensions: 426
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 422
Number of HSP's gapped (non-prelim): 9
length of query: 180
length of database: 14,793,348
effective HSP length: 78
effective length of query: 102
effective length of database: 11,864,916
effective search space: 1210221432
effective search space used: 1210221432
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 57 (27.1 bits)