GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002395-TA|BGIBMGA002395-PA|undefined
         (180 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell l...    29   1.5  
AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger p...    29   1.5  
Z68882-2|CAA93110.1|  306|Caenorhabditis elegans Hypothetical pr...    28   4.4  
AC024090-4|AAK67221.1|  300|Caenorhabditis elegans Hypothetical ...    27   7.7  

>U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell
           lineage protein 13 protein.
          Length = 2248

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 15/75 (20%), Positives = 34/75 (45%), Gaps = 1/75 (1%)

Query: 101 HVWEDSNDLREKTKESCYEEFGLNKLGLSSVCKESYRLNKIYFYDPDRNMIYTKKMTIPY 160
           H+    + L +    SC     L         K+   +NKI+++    N I++K   + +
Sbjct: 729 HLNSIQSTLADDIAMSCIRTISLPASNCIDPLKDLLLVNKIFYFCTKCNYIFSKDPVV-H 787

Query: 161 CCTCTILKENPVQDY 175
           C +C + +++ ++ Y
Sbjct: 788 CLSCEVTEDDLIEVY 802


>AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger
           protein LIN-13 protein.
          Length = 2248

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 15/75 (20%), Positives = 34/75 (45%), Gaps = 1/75 (1%)

Query: 101 HVWEDSNDLREKTKESCYEEFGLNKLGLSSVCKESYRLNKIYFYDPDRNMIYTKKMTIPY 160
           H+    + L +    SC     L         K+   +NKI+++    N I++K   + +
Sbjct: 729 HLNSIQSTLADDIAMSCIRTISLPASNCIDPLKDLLLVNKIFYFCTKCNYIFSKDPVV-H 787

Query: 161 CCTCTILKENPVQDY 175
           C +C + +++ ++ Y
Sbjct: 788 CLSCEVTEDDLIEVY 802


>Z68882-2|CAA93110.1|  306|Caenorhabditis elegans Hypothetical
           protein C47E12.2 protein.
          Length = 306

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 3/72 (4%)

Query: 98  VNHHVWEDSNDLREKTKESCYEE-FGLNKLGLSSVCKESYRLNKIYF--YDPDRNMIYTK 154
           +NHH   +   L + T ++   E F     G +   +  +    +YF  YD  RN I T 
Sbjct: 158 INHHTKREYKGLVDCTMKTVKNEGFSALYRGFAISLQTYFIYRSVYFGLYDAIRNTINTD 217

Query: 155 KMTIPYCCTCTI 166
           K  +P+  +  I
Sbjct: 218 KKKLPFYASFAI 229


>AC024090-4|AAK67221.1|  300|Caenorhabditis elegans Hypothetical
           protein C52E2.7 protein.
          Length = 300

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 133 KESYRLNKIYFYDPDRNMIYTKKMTIPYCCTCT 165
           +++ R N I F DP R   Y    +  + C+CT
Sbjct: 268 QQNDRTNVIVFVDPIRRWFYLTTYSFSHHCSCT 300


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.321    0.138    0.436 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,003,454
Number of Sequences: 27539
Number of extensions: 219878
Number of successful extensions: 419
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 418
Number of HSP's gapped (non-prelim): 4
length of query: 180
length of database: 12,573,161
effective HSP length: 77
effective length of query: 103
effective length of database: 10,452,658
effective search space: 1076623774
effective search space used: 1076623774
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 57 (27.1 bits)