GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002394-TA|BGIBMGA002394-PA|IPR000994|Peptidase M24,
catalytic core, IPR001714|Peptidase M24, methionine aminopeptidase,
IPR002467|Peptidase M24A, methionine aminopeptidase, subfamily 1
         (378 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        24   2.1  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    23   4.8  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           22   6.3  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    22   8.3  
AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450 ...    22   8.3  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    22   8.3  

>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 1/38 (2%)

Query: 47  LAKGDNTDAANVEYNPWPSYTFTGKLRPFPAGPKRTVP 84
           LA+G N DA N    P P+   T +L P P     T P
Sbjct: 298 LAQGVNDDAFNSVATPTPTSVMT-ELYPSPVPGHSTSP 334


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 10/25 (40%), Positives = 16/25 (64%)

Query: 133 VLDEAARVCDVGVSTDEIDRVVHEA 157
           VLDEA R+ D+G   D  + + H++
Sbjct: 314 VLDEADRMLDMGFLGDVEEMLSHQS 338


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 7/19 (36%), Positives = 11/19 (57%)

Query: 79 PKRTVPPHIGRPDYADHPT 97
          P+R  P H+  P+   HP+
Sbjct: 78 PQRLAPTHLQSPNTQTHPS 96


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 8/20 (40%), Positives = 14/20 (70%)

Query: 249 PGEKYREIGNVIQKHAQANG 268
           PG  Y +  N++QK+A+ +G
Sbjct: 414 PGAAYYQNENMLQKNAEYSG 433


>AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450
           monooxigenase CYP4Q4 protein.
          Length = 491

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 12/38 (31%), Positives = 19/38 (50%)

Query: 212 FHGDLNETFFVGNVPETTRKLVQVTHECLQKAIDIVRP 249
           FH ++ + F      ET R +  +  EC +  ID+V P
Sbjct: 134 FHFNILQEFIQIFNEETKRLVEDLEAECHKPYIDVVVP 171


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 8/20 (40%), Positives = 14/20 (70%)

Query: 249 PGEKYREIGNVIQKHAQANG 268
           PG  Y +  N++QK+A+ +G
Sbjct: 362 PGAAYYQNENMLQKNAEYSG 381


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.320    0.138    0.447 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,857
Number of Sequences: 317
Number of extensions: 4853
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 6
length of query: 378
length of database: 114,650
effective HSP length: 58
effective length of query: 320
effective length of database: 96,264
effective search space: 30804480
effective search space used: 30804480
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 44 (21.8 bits)