GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002394-TA|BGIBMGA002394-PA|IPR000994|Peptidase M24,
catalytic core, IPR001714|Peptidase M24, methionine aminopeptidase,
IPR002467|Peptidase M24A, methionine aminopeptidase, subfamily 1
         (378 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3E7.10 |fma1||methionine aminopeptidase Fma1 |Schizosaccharo...   405   e-114
SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomy...    32   0.15 
SPBC18A7.01 ||SPBC4F6.19c|X-Pro dipeptidase |Schizosaccharomyces...    29   1.4  
SPCC553.09c |spb70|pol12|DNA polymerase alpha B-subunit|Schizosa...    27   5.8  
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc...    26   7.6  

>SPBC3E7.10 |fma1||methionine aminopeptidase Fma1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 379

 Score =  405 bits (997), Expect = e-114
 Identities = 192/359 (53%), Positives = 243/359 (67%), Gaps = 12/359 (3%)

Query: 12  QLQCPTCIKLGIKGSFFCNQDCFKKSWKTHKIIHSLAKGDNTDAANVEYNPWPSYTFTGK 71
           +LQCP C+  G+K S+FC Q+CF+ SW  HK +H     +  +     YNP+P + F G 
Sbjct: 21  RLQCPKCLNDGVK-SYFCGQECFRNSWNIHKHLHRPPNVEKREDGT--YNPFPKFHFAGS 77

Query: 72  LRP-FPAGPKRTVPPHIGRPDYADHPTGFPASEYAAKGSAQIKILDDEEIEGMRVACRLG 130
           L+P +P  P R VPPHI RPDYA   TG   SE     S ++K L  +E EGMR  CRLG
Sbjct: 78  LKPVYPLSPIRKVPPHIKRPDYAK--TGVSRSEQIEGRSFKLKRLTPKEQEGMRKVCRLG 135

Query: 131 REVLDEAARVCDVGVSTDEIDRVVHEACIERECYPSPLNYYNFPNSCCTSINEVICHGIP 190
           REVLD AA     G +TDE+D +VH ACIER+C+PS LNYY FP S CTS+NE+ICHGIP
Sbjct: 136 REVLDAAAAAVRPGTTTDELDSIVHNACIERDCFPSTLNYYAFPKSVCTSVNEIICHGIP 195

Query: 191 DLRPLQDGDICNVDVTVYHRGFHGDLNETFFVGNVPETTRK---LVQVTHECLQKAIDIV 247
           D RPL+DGDI N+DV++YH GFHGDLNET++VG+  +       LV+ T   L KAI  V
Sbjct: 196 DQRPLEDGDIVNIDVSLYHNGFHGDLNETYYVGDKAKANPDLVCLVENTRIALDKAIAAV 255

Query: 248 RPGEKYREIGNVIQKHAQA---NGYSVVRSYCGHGIHRLFHTAPNVPHYAKNKAIGIMKV 304
           +PG  ++E GN+I+KH  +      SVVR+YCGHGI++LFH +P++PHY+ NKA GI + 
Sbjct: 256 KPGVLFQEFGNIIEKHTNSITEKQISVVRTYCGHGINQLFHCSPSIPHYSHNKAPGIARP 315

Query: 305 GHCFTIEPMINEGGWRDEQWPDHWTAVTADGSRSAQFEQTLLVTESGCDILTKRNTGRP 363
           G  FTIEPM+  G  RD  WPD WT+ TA G  SAQFE TLLVTE+GC++LT R    P
Sbjct: 316 GMTFTIEPMLTLGPARDITWPDDWTSSTASGRCSAQFEHTLLVTETGCEVLTARLPNSP 374


>SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 496

 Score = 31.9 bits (69), Expect = 0.15
 Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 3/72 (4%)

Query: 106 AKGSAQIKILDDEEIEGMRVACRLGREVLDEAARVCDVGVSTDEIDRVVHEACIERECYP 165
           AK S  I+IL   E + +R    LG+E  D       V  S      ++H  C   + Y 
Sbjct: 57  AKKSDAIEILPISEFDPVRSLTTLGKEETDFLVDAVFVSESNHHEKEILHRTC---KRYR 113

Query: 166 SPLNYYNFPNSC 177
            PLN  + P+ C
Sbjct: 114 IPLNIIDNPSLC 125


>SPBC18A7.01 ||SPBC4F6.19c|X-Pro dipeptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 451

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 33/133 (24%), Positives = 51/133 (38%), Gaps = 8/133 (6%)

Query: 187 HGIPDLRPLQDGDICNVDVTVYHRGFHGDLNETFFVGNVPETTR--KLVQVTHECLQKAI 244
           HG P  R L+  +   +DV     G+H D   T        T R  KL  + ++     I
Sbjct: 288 HGGPSNRRLKKSEFVLMDVGTTLFGYHSDCTRTVLPHGQKMTERMEKLWNLVYDAQTAGI 347

Query: 245 DIVR--PGEKYREIGNVIQKHAQANGYSVVRSY-CGHGIHRLFHTAPNVPHYAKNKAIGI 301
            ++         E+    +K  +  GY     +  GHG+    H    +     NK   +
Sbjct: 348 QMLSHLSNTSCAEVDLAARKVIKDAGYGEYFIHRLGHGLGLEEHEQTYL--NPANKGTPV 405

Query: 302 MKVGHCFTIEPMI 314
            K G+ FT+EP I
Sbjct: 406 QK-GNVFTVEPGI 417


>SPCC553.09c |spb70|pol12|DNA polymerase alpha
           B-subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 10/19 (52%), Positives = 13/19 (68%)

Query: 167 PLNYYNFPNSCCTSINEVI 185
           P N+  FPN C  SIN+V+
Sbjct: 414 PSNFKCFPNPCMFSINDVV 432


>SPAC328.05 |||RNA-binding protein involved in export of
           mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 10/27 (37%), Positives = 16/27 (59%)

Query: 203 VDVTVYHRGFHGDLNETFFVGNVPETT 229
           ++  VYH   HG  ++  +VGN+P  T
Sbjct: 265 IEDLVYHAYPHGPCSDCIYVGNLPWAT 291


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.138    0.447 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,906,104
Number of Sequences: 5004
Number of extensions: 84443
Number of successful extensions: 186
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 175
Number of HSP's gapped (non-prelim): 5
length of query: 378
length of database: 2,362,478
effective HSP length: 74
effective length of query: 304
effective length of database: 1,992,182
effective search space: 605623328
effective search space used: 605623328
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 55 (26.2 bits)