GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002394-TA|BGIBMGA002394-PA|IPR000994|Peptidase M24,
catalytic core, IPR001714|Peptidase M24, methionine aminopeptidase,
IPR002467|Peptidase M24A, methionine aminopeptidase, subfamily 1
         (378 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27914| Best HMM Match : No HMM Matches (HMM E-Value=.)             167   1e-41
SB_30102| Best HMM Match : No HMM Matches (HMM E-Value=.)             113   2e-25
SB_48460| Best HMM Match : No HMM Matches (HMM E-Value=.)              52   1e-06
SB_31371| Best HMM Match : Peptidase_M24 (HMM E-Value=0)               42   8e-04
SB_25722| Best HMM Match : Peptidase_M24 (HMM E-Value=1.5e-32)         36   0.054
SB_7963| Best HMM Match : Pyr_redox_dim (HMM E-Value=2.2e-39)          33   0.38 
SB_48682| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_20015| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.7  
SB_8638| Best HMM Match : PP2C (HMM E-Value=6.5e-32)                   30   2.7  
SB_32586| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.7  
SB_2422| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.7  
SB_3099| Best HMM Match : TFIIE_beta (HMM E-Value=1.8e-20)             29   4.7  
SB_54| Best HMM Match : Actin (HMM E-Value=0)                          29   6.2  
SB_17603| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.2  
SB_8542| Best HMM Match : PT (HMM E-Value=4)                           29   8.2  
SB_41533| Best HMM Match : SH2 (HMM E-Value=6.3e-25)                   29   8.2  

>SB_27914| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 220

 Score =  167 bits (406), Expect = 1e-41
 Identities = 85/189 (44%), Positives = 120/189 (63%), Gaps = 9/189 (4%)

Query: 74  PFPAGPKRTVPPHIGRPDYADHPTG-FPASEYAAKGSAQIKILDDEEIEGMRVACRLGRE 132
           P+   P   VP HI  P YA+  TG  P   ++      ++I   ++IE +R +C+L R 
Sbjct: 13  PYKVSPPHPVPAHIPTPCYAE--TGKVPPHPWS------VEIKTKQQIEAVRKSCQLARC 64

Query: 133 VLDEAARVCDVGVSTDEIDRVVHEACIERECYPSPLNYYNFPNSCCTSINEVICHGIPDL 192
           V+  A ++  VG++T+EID  VH+A IE   YPSPLNY  FP S CTS+NEV  HGIP+ 
Sbjct: 65  VMRMAKQIVKVGITTEEIDYHVHKAIIEHGAYPSPLNYRGFPKSVCTSVNEVAVHGIPNS 124

Query: 193 RPLQDGDICNVDVTVYHRGFHGDLNETFFVGNVPETTRKLVQVTHECLQKAIDIVRPGEK 252
           R LQ+GD+ +VD+++++ G HGDL ETF VGNV E+ R+LV +  + L +AI I  PG +
Sbjct: 125 RCLQNGDLLSVDISLFYGGVHGDLCETFLVGNVDESGRRLVDICRQSLDEAISICGPGVR 184

Query: 253 YREIGNVIQ 261
              IGN I+
Sbjct: 185 MSTIGNTIR 193



 Score = 32.3 bits (70), Expect = 0.67
 Identities = 12/20 (60%), Positives = 18/20 (90%)

Query: 337 RSAQFEQTLLVTESGCDILT 356
           R+AQFE+T+L+TE G ++LT
Sbjct: 193 RTAQFEETVLITEDGVEVLT 212


>SB_30102| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 69

 Score =  113 bits (273), Expect = 2e-25
 Identities = 48/67 (71%), Positives = 60/67 (89%)

Query: 180 SINEVICHGIPDLRPLQDGDICNVDVTVYHRGFHGDLNETFFVGNVPETTRKLVQVTHEC 239
           SINEVICHGIPD RPL+DGDI N+D+TV++ G+HGDLNETFFVGNV +  ++LV+VT+EC
Sbjct: 2   SINEVICHGIPDKRPLEDGDIVNLDITVFYNGYHGDLNETFFVGNVADEYKQLVKVTYEC 61

Query: 240 LQKAIDI 246
           L +AIDI
Sbjct: 62  LMQAIDI 68


>SB_48460| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 38

 Score = 51.6 bits (118), Expect = 1e-06
 Identities = 26/38 (68%), Positives = 29/38 (76%), Gaps = 2/38 (5%)

Query: 334 DGSRSAQFEQTLLVTESGCDILTKR--NTGRPWFLDQL 369
           DG RSAQFEQTLLVTE+GC+ILT R    G P FL Q+
Sbjct: 1   DGKRSAQFEQTLLVTETGCEILTIRPEENGAPHFLAQM 38


>SB_31371| Best HMM Match : Peptidase_M24 (HMM E-Value=0)
          Length = 465

 Score = 41.9 bits (94), Expect = 8e-04
 Identities = 31/114 (27%), Positives = 51/114 (44%), Gaps = 9/114 (7%)

Query: 178 CTSINEVICHGIPDLR----PLQDGDICNVDVTVYHRGFHGDLNETFFVGNVPE---TTR 230
           C S+N  +CH  P L      L DGD+  +D  V+  GF   +  T  VG   E   T R
Sbjct: 83  CISVNNCVCHFSPLLSEPDITLNDGDLVKIDFGVHIDGFIAVIGHTIVVGCSKENKVTGR 142

Query: 231 K--LVQVTHECLQKAIDIVRPGEKYREIGNVIQKHAQANGYSVVRSYCGHGIHR 282
           K  ++   +   + A  +V+PG +   +  ++QK A++     +     H + R
Sbjct: 143 KADVLLAAYLASEVAQRMVKPGAENSTVTELVQKVAESFKCKPIEGMLSHQLKR 196


>SB_25722| Best HMM Match : Peptidase_M24 (HMM E-Value=1.5e-32)
          Length = 304

 Score = 35.9 bits (79), Expect = 0.054
 Identities = 22/90 (24%), Positives = 44/90 (48%), Gaps = 5/90 (5%)

Query: 179 TSINEVICHGIPDLRPLQDGDICNVDVTVYHRGFHGDLNETFFVGNVP-ETTRKLVQVTH 237
           + IN    H     R ++ GDI N++      G++  L  T F   VP +   KL ++  
Sbjct: 124 SGINTDGAHNPVTSRRVKKGDILNMNSFSMISGYYTALERTMFYDRVPSDRHMKLWEINV 183

Query: 238 ECLQKAIDIVRPGEK----YREIGNVIQKH 263
           +  +K +++++PG++     RE+  +  +H
Sbjct: 184 KVHEKGMEVIKPGKRCCDIARELNEIFLQH 213


>SB_7963| Best HMM Match : Pyr_redox_dim (HMM E-Value=2.2e-39)
          Length = 387

 Score = 33.1 bits (72), Expect = 0.38
 Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 3/53 (5%)

Query: 106 AKGSAQIKILDDEEIE---GMRVACRLGREVLDEAARVCDVGVSTDEIDRVVH 155
           A+    +K+L D+E +   G+ + C    E+++EAA   + G S ++I RV H
Sbjct: 311 AEIDGMVKVLGDKETDRLLGVHMICPGAGELINEAALAMEYGASCEDIARVCH 363


>SB_48682| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 160

 Score = 31.5 bits (68), Expect = 1.2
 Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 9/68 (13%)

Query: 74  PFPAGPKRTVPPHIGRPDYADHPTG-FPASEYAAKGSAQIKILDDEEIEGMRVACRLGRE 132
           P+   P   VP HI  P YA+  TG  P   ++      ++I   ++IE +R +C+L R 
Sbjct: 99  PYKVSPPHPVPAHIPTPCYAE--TGKVPPHPWS------VEIKTKQQIEAVRKSCQLARC 150

Query: 133 VLDEAARV 140
           V+  A ++
Sbjct: 151 VMRMAKQI 158


>SB_20015| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 593

 Score = 30.3 bits (65), Expect = 2.7
 Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 50  GDNTDAANVEYNPWPSYT-FTGKLRPFPAGPKRTVPPHIGRPDYADH 95
           G+N+  A     P PS    TG   P P G ++ V PH GR  Y DH
Sbjct: 357 GNNSPLAPPSRPPPPSARPLTGNEEPLPPGWEQRVDPH-GRIYYVDH 402


>SB_8638| Best HMM Match : PP2C (HMM E-Value=6.5e-32)
          Length = 905

 Score = 30.3 bits (65), Expect = 2.7
 Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 5/63 (7%)

Query: 2  CETPGCKSIAQLQCPTCIKLGIKGSFFCNQDCFKKSWKTHKIIHSLAKGDNTDAANVEYN 61
          CE     ++   +C  C     K + +C++DC +  WK HK I    K       +V   
Sbjct: 8  CEFCYATNVQLQKCSRC-----KSTMYCSKDCPRSHWKHHKAICKAKKHSKDSKLDVSTT 62

Query: 62 PWP 64
            P
Sbjct: 63 TAP 65


>SB_32586| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 462

 Score = 30.3 bits (65), Expect = 2.7
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)

Query: 23  IKGSFFCNQDCFKKSWKTHKIIHSLAKGDNTDAAN 57
           I  SF  N  CF ++WK+ ++I SL  GD  D  N
Sbjct: 347 INASFATN--CFAQAWKSAEVIPSLNAGDPDDLEN 379


>SB_2422| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 232

 Score = 29.5 bits (63), Expect = 4.7
 Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 6/74 (8%)

Query: 178 CTSINEVICHGIPDLRPLQDGDICNVDVTVYHRG--FHGDLNETFFVGNVPETTRKLVQV 235
           C   N      IPD + +      N+D T       FH ++ + F    V  T RK  + 
Sbjct: 38  CEEYNAAFEGEIPDFKEMYK----NIDATTDGPSCYFHKEIFKAFPDSKVILTVRKDEET 93

Query: 236 THECLQKAIDIVRP 249
             + LQK ID++ P
Sbjct: 94  RRKSLQKTIDVIEP 107


>SB_3099| Best HMM Match : TFIIE_beta (HMM E-Value=1.8e-20)
          Length = 318

 Score = 29.5 bits (63), Expect = 4.7
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 2/55 (3%)

Query: 321 DEQWPDHWTAVTADGSRSAQFEQTLLVTESGCDILTKRNTGRPWFLDQLEKIEAK 375
           DE++  HW AV+ DG   A  E+ L+  ++G   +      R   + Q +K + K
Sbjct: 213 DEEFQKHWRAVSVDGIGEADIEKYLV--KAGISTMQDTGVKRTQQMPQRKKAKRK 265


>SB_54| Best HMM Match : Actin (HMM E-Value=0)
          Length = 2486

 Score = 29.1 bits (62), Expect = 6.2
 Identities = 13/29 (44%), Positives = 17/29 (58%)

Query: 133  VLDEAARVCDVGVSTDEIDRVVHEACIER 161
            V+D  +  C  G+STDE  RVV  A + R
Sbjct: 2098 VIDNGSGFCKAGLSTDESPRVVFPAIVGR 2126


>SB_17603| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 826

 Score = 29.1 bits (62), Expect = 6.2
 Identities = 12/24 (50%), Positives = 15/24 (62%)

Query: 74 PFPAGPKRTVPPHIGRPDYADHPT 97
          P P G + TV P+ GRP + DH T
Sbjct: 7  PLPNGWEMTVDPNSGRPFFIDHNT 30


>SB_8542| Best HMM Match : PT (HMM E-Value=4)
          Length = 650

 Score = 28.7 bits (61), Expect = 8.2
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 4/54 (7%)

Query: 61  NPWPSYTFTGKLRP--FPAG-PKRTVPPHIGRPDYADHPTGFPASEYAAKGSAQ 111
           NP P Y  +G  +P  +P G P+    P+ G P    +P+G P S Y   G+ Q
Sbjct: 291 NPQPRYYPSGNPQPSYYPFGNPQPRYYPY-GNPQPKYYPSGNPQSRYYLYGNPQ 343


>SB_41533| Best HMM Match : SH2 (HMM E-Value=6.3e-25)
          Length = 389

 Score = 28.7 bits (61), Expect = 8.2
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 321 DEQWPDHWTAVTADGSRSAQFEQTLLVTESGCDILTKRNTGRPWFLDQLEKIEAKD 376
           D  + + W  V A  S+        LV ++  D     + G+PWF D + K  A+D
Sbjct: 182 DNVFDNDWLWVAAQKSKERGLVPAALVDDA--DPKLDPHAGKPWFFDDVTKEAAQD 235


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.320    0.138    0.447 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,662,161
Number of Sequences: 59808
Number of extensions: 671090
Number of successful extensions: 1349
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1326
Number of HSP's gapped (non-prelim): 38
length of query: 378
length of database: 16,821,457
effective HSP length: 83
effective length of query: 295
effective length of database: 11,857,393
effective search space: 3497930935
effective search space used: 3497930935
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)