GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002394-TA|BGIBMGA002394-PA|IPR000994|Peptidase M24,
catalytic core, IPR001714|Peptidase M24, methionine aminopeptidase,
IPR002467|Peptidase M24A, methionine aminopeptidase, subfamily 1
         (378 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024757-4|AAK68429.2|  371|Caenorhabditis elegans Methionine am...   549   e-156
AC006696-3|AAF39984.1|  391|Caenorhabditis elegans Hypothetical ...    40   0.004
AL117205-8|CAB55167.1|  444|Caenorhabditis elegans Hypothetical ...    32   0.77 
Z81479-9|CAB03937.1| 1117|Caenorhabditis elegans Hypothetical pr...    31   1.3  
Z46794-3|CAA86783.1|  429|Caenorhabditis elegans Hypothetical pr...    30   2.3  
AF003385-6|AAB54246.1|  354|Caenorhabditis elegans Hypothetical ...    30   2.3  

>AC024757-4|AAK68429.2|  371|Caenorhabditis elegans Methionine
           aminopeptidase protein 1 protein.
          Length = 371

 Score =  549 bits (1355), Expect = e-156
 Identities = 244/367 (66%), Positives = 289/367 (78%), Gaps = 9/367 (2%)

Query: 6   GCKSIAQLQCPTCIKLGIKGSFFCNQDCFKKSWKTHKIIHSLAKGDNTDAANVEYNPWPS 65
           GC+  A+L+CPTCIK+ +  ++FC+Q CFK  W  HK  HS   G         YNPWP 
Sbjct: 11  GCQKPAKLRCPTCIKMSLPDAYFCDQSCFKAFWPIHKFSHSDVNGP--------YNPWPC 62

Query: 66  YTFTGKLRPFPAGPKRTVPPHIGRPDYADHPTGFPASEYAAKGSAQIKILDDEEIEGMRV 125
           Y+FTG LRP     +R VP HI RPDYA HP G    E  +K    IK+L DEE EG++V
Sbjct: 63  YSFTGSLRPGRVTDRRPVPDHIPRPDYALHPQGVSLEERQSKSERVIKVLTDEEKEGLKV 122

Query: 126 ACRLGREVLDEAARVCDVGVSTDEIDRVVHEACIERECYPSPLNYYNFPNSCCTSINEVI 185
           AC+LGRE L+EAA+ C  GV+T+EIDRVVHEA IER+CYPSPL YY FP SCCTS+NEVI
Sbjct: 123 ACKLGRECLNEAAKACGPGVTTEEIDRVVHEAAIERDCYPSPLGYYKFPKSCCTSVNEVI 182

Query: 186 CHGIPDLRPLQDGDICNVDVTVYHRGFHGDLNETFFVGN-VPETTRKLVQVTHECLQKAI 244
           CHGIPD+R L++GD+CNVDVTVYHRGFHGDLNETF VG+ V E +RKLV+VT ECLQ+AI
Sbjct: 183 CHGIPDMRKLENGDLCNVDVTVYHRGFHGDLNETFLVGDKVDEESRKLVKVTFECLQQAI 242

Query: 245 DIVRPGEKYREIGNVIQKHAQANGYSVVRSYCGHGIHRLFHTAPNVPHYAKNKAIGIMKV 304
            IV+PG K+REIGNVIQKHA ANG+SVV+ YCGHGIHRLFHTAPNVPHYAKN A G+MK 
Sbjct: 243 AIVKPGVKFREIGNVIQKHANANGFSVVKGYCGHGIHRLFHTAPNVPHYAKNNATGVMKA 302

Query: 305 GHCFTIEPMINEGGWRDEQWPDHWTAVTADGSRSAQFEQTLLVTESGCDILTKRNTGRPW 364
           G+ FTIEPMIN G + D++WPD WTAVT DG RSAQFEQTLLVT++GC+ILTKR+  RPW
Sbjct: 303 GNSFTIEPMINAGTYHDDKWPDDWTAVTRDGRRSAQFEQTLLVTDTGCEILTKRDGNRPW 362

Query: 365 FLDQLEK 371
           F+DQ+E+
Sbjct: 363 FMDQIEQ 369


>AC006696-3|AAF39984.1|  391|Caenorhabditis elegans Hypothetical
           protein W08E12.7 protein.
          Length = 391

 Score = 39.5 bits (88), Expect = 0.004
 Identities = 43/181 (23%), Positives = 72/181 (39%), Gaps = 12/181 (6%)

Query: 114 ILDDEEIEGMRVACRLGREVLDEAARVCDVGVSTDEIDRVVHEACIER--ECYPSPLNYY 171
           + +D  +   +VA  +   VL E       G    ++  +  +  +E+  + Y    N+ 
Sbjct: 23  LANDAVVTKYQVAAEITNAVLKEVLANIKEGAIAGDLCDLGDKLILEKTGKLYKKEKNFT 82

Query: 172 N-FPNSCCTSINEVICHGIP--DLRP--LQDGDICNVDVTVYHRGFHGDLNETFFVGNVP 226
                  C SI+  ICH  P     P  L++G +  VD+  +  G       T  VG   
Sbjct: 83  KGIAMPTCISIDNCICHYTPLKSEAPVVLKNGQVVKVDLGTHIDGLIATAAHTVVVGASK 142

Query: 227 ET--TRKLVQV---THECLQKAIDIVRPGEKYREIGNVIQKHAQANGYSVVRSYCGHGIH 281
           +   T KL  +   TH+ L+ AI  +RP  +   I   I K A   G + + +   H + 
Sbjct: 143 DNKVTGKLADLLRGTHDALEIAIRSLRPDTENTTITKNIDKTAAEFGLTPIENMLSHQLE 202

Query: 282 R 282
           R
Sbjct: 203 R 203


>AL117205-8|CAB55167.1|  444|Caenorhabditis elegans Hypothetical
           protein Y116A8A.9 protein.
          Length = 444

 Score = 31.9 bits (69), Expect = 0.77
 Identities = 33/132 (25%), Positives = 53/132 (40%), Gaps = 18/132 (13%)

Query: 173 FPNSCCTSINEVICHGIP---DLRPLQDGDICNVDVTVYHRGFHGDLNETFFVGNVPETT 229
           FP  C  S+N    H  P   D   LQ GD+C +D  ++ R   G L ++ F  +     
Sbjct: 183 FPTGC--SLNHCAAHYTPNAGDTTVLQYGDVCKIDYGIHVR---GRLIDSAFTVHFDPKF 237

Query: 230 RKLVQVTHECLQKAIDIVRPGEKYREIGNVIQK-----HAQANGYSVV----RSYCGHGI 280
             LV+   E     I       +  ++G ++++       + +G S V    R+  GH I
Sbjct: 238 DPLVEAVREATNAGIKESGIDVRLCDVGEIVEEVMTSHEVELDGKSYVVKPIRNLNGHSI 297

Query: 281 HRL-FHTAPNVP 291
            +   H    VP
Sbjct: 298 AQYRIHAGKTVP 309


>Z81479-9|CAB03937.1| 1117|Caenorhabditis elegans Hypothetical
           protein C34F6.10 protein.
          Length = 1117

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)

Query: 215 DLNETFFVGNVPETTRKLVQVTHECLQKAIDIVRPGEKY 253
           DL  T  +  +P T R L++VT +     +D V+PGEKY
Sbjct: 687 DLQYTVHIRQLP-TKRDLLKVTTKAKNIVLDSVQPGEKY 724


>Z46794-3|CAA86783.1|  429|Caenorhabditis elegans Hypothetical
          protein R06F6.4 protein.
          Length = 429

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 7/50 (14%)

Query: 9  SIAQLQ-CPTCIKLGIKGSFFCNQDCFKKSWKTHKIIHSLAKGDNTDAAN 57
          S+A+L+ C  C +L      +C+Q+C +  WK HK+     K  N + AN
Sbjct: 32 SMAELKKCSACRRLA-----YCSQECQRADWKLHKVECKAIKTHN-EVAN 75


>AF003385-6|AAB54246.1|  354|Caenorhabditis elegans Hypothetical
           protein R08F11.4 protein.
          Length = 354

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 4/46 (8%)

Query: 256 IGNVIQKHAQANGYSVVRSYCGHGIHRLFHTAPNVPHYAKNKAIGI 301
           IGN I++  +A G  V+   CG G    FH+     HY K++ +G+
Sbjct: 154 IGNGIKEKLEAGGIRVLDVGCGGG----FHSGLLAEHYPKSQFVGL 195


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.320    0.138    0.447 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,661,333
Number of Sequences: 27539
Number of extensions: 494356
Number of successful extensions: 962
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 957
Number of HSP's gapped (non-prelim): 7
length of query: 378
length of database: 12,573,161
effective HSP length: 83
effective length of query: 295
effective length of database: 10,287,424
effective search space: 3034790080
effective search space used: 3034790080
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)