GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002393-TA|BGIBMGA002393-PA|IPR002048|Calcium-binding
EF-hand, IPR001993|Mitochondrial substrate carrier
         (667 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF263515-1|AAF74207.1|  126|Tribolium castaneum cytochrome P450 ...    26   0.96 
DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc gr...    24   2.9  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   5.1  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    23   8.9  

>AF263515-1|AAF74207.1|  126|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 126

 Score = 25.8 bits (54), Expect = 0.96
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 266 LEVDILFNLCDILHHTNGRIVYNDLNSIT-PEQYFKQVTRRVAEIKAVS 313
           ++ +I+  + D+L  T  + VYNDL  +   E+  K+V R    +  +S
Sbjct: 18  VQEEIVQEMKDVLGDTKKKPVYNDLQELKYMERVIKEVLRLYPSVHYIS 66


>DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc
           growth factor 4 protein.
          Length = 431

 Score = 24.2 bits (50), Expect = 2.9
 Identities = 11/35 (31%), Positives = 17/35 (48%)

Query: 59  IAGIVDMDKDGYISFSEFQAFEGLLCVPDALYKTA 93
           I+G+  +  DG +    +   EGLL  P+   K A
Sbjct: 304 ISGVPPLSIDGALEAGPYSKEEGLLSYPEVCVKLA 338


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.4 bits (48), Expect = 5.1
 Identities = 10/22 (45%), Positives = 15/22 (68%)

Query: 102  NGLVAFDEFAEVMRKTALHKKL 123
            N  V++D+ AE+ RK+ L K L
Sbjct: 2632 NQWVSYDDIAEIRRKSRLVKAL 2653


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 22.6 bits (46), Expect = 8.9
 Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)

Query: 226 LNNMELIKRVYLNATNGHRTQEVTKEEFLHSAQMMSQ 262
           + + + I R+Y  AT  H T E    EFL S   + Q
Sbjct: 293 IESQDAITRIYAIATMWHETPE-EMMEFLKSVFRLDQ 328


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.321    0.138    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,304
Number of Sequences: 317
Number of extensions: 6227
Number of successful extensions: 20
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 17
Number of HSP's gapped (non-prelim): 5
length of query: 667
length of database: 114,650
effective HSP length: 61
effective length of query: 606
effective length of database: 95,313
effective search space: 57759678
effective search space used: 57759678
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 46 (22.6 bits)