GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002393-TA|BGIBMGA002393-PA|IPR002048|Calcium-binding
EF-hand, IPR001993|Mitochondrial substrate carrier
         (667 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    80   7e-17
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    80   7e-17
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         26   0.86 
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    26   0.86 
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    26   0.86 
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    24   3.5  
DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.              24   4.6  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 79.8 bits (188), Expect = 7e-17
 Identities = 65/273 (23%), Positives = 111/273 (40%), Gaps = 18/273 (6%)

Query: 347 PIDLVKTRMQNQRTGSFIGEVA-YRNSWDCFKKVIRHEGVFGLYRGLVPQLIGVAPEKAI 405
           PI+ VK  +Q Q     I E   Y+   DCF ++ + +G    +RG +  +I   P +A+
Sbjct: 30  PIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWRGNLANVIRYFPTQAL 89

Query: 406 KLTVNDLVRDKFM---DKKGNISLY--AEIIAGACAGGSQVVFTNPLEIVKIRLQVAGEI 460
                D  +  F+   DK      Y    + +G  AG + + F  PL+  + RL      
Sbjct: 90  NFAFKDKYKQVFLGGVDKNTQFLRYFVGNLASGGAAGATSLCFVYPLDFARTRLAADVGK 149

Query: 461 AGGTKVKA------WSVVKDLGLFGLYKGAKACLLRDVPFSAIYFPAYAHVKAKFADENG 514
           AGG +           + K  G+ GLY+G    +   + + A YF  Y   +    D   
Sbjct: 150 AGGEREFTGLGNCLTKIFKADGITGLYRGFGVSVQGIIIYRAAYFGFYDTARGMLPDPK- 208

Query: 515 YNHPLTLLXXXXXXXXXXXSLVT-PADVIKTRLQVVA--RSGQTTYNGVIDATRKIYAEE 571
              P  +             +V+ P D ++ R+ + +     +  Y   +     IY  E
Sbjct: 209 -KTPFLISWGIAQVVTTVAGIVSYPFDTVRRRMMMQSGRAKSEILYKSTLHCWATIYKTE 267

Query: 572 GARAFWKGAIARVFRSSPQFGVTLVTYEILQRL 604
           G  AF+KGA + + R +    + LV Y+ ++ L
Sbjct: 268 GGNAFFKGAFSNILRGTGG-ALVLVLYDEIKNL 299



 Score = 34.7 bits (76), Expect = 0.002
 Identities = 38/171 (22%), Positives = 67/171 (39%), Gaps = 15/171 (8%)

Query: 424 ISLYAEIIAGACAGGSQVVFTNPLEIVKIRLQV---AGEIAGGTKVKAW-----SVVKDL 475
           ++   + +AG  A         P+E VK+ LQV   + +I+   + K        + K+ 
Sbjct: 8   VAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQ 67

Query: 476 GLFGLYKGAKACLLRDVPFSAIYF---PAYAHVKAKFADENG--YNHPLTLLXXXXXXXX 530
           G    ++G  A ++R  P  A+ F     Y  V     D+N     + +  L        
Sbjct: 68  GFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVGNLASGGAAGA 127

Query: 531 XXXSLVTPADVIKTRL--QVVARSGQTTYNGVIDATRKIYAEEGARAFWKG 579
                V P D  +TRL   V    G+  + G+ +   KI+  +G    ++G
Sbjct: 128 TSLCFVYPLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKADGITGLYRG 178


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 79.8 bits (188), Expect = 7e-17
 Identities = 65/273 (23%), Positives = 111/273 (40%), Gaps = 18/273 (6%)

Query: 347 PIDLVKTRMQNQRTGSFIGEVA-YRNSWDCFKKVIRHEGVFGLYRGLVPQLIGVAPEKAI 405
           PI+ VK  +Q Q     I E   Y+   DCF ++ + +G    +RG +  +I   P +A+
Sbjct: 30  PIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWRGNLANVIRYFPTQAL 89

Query: 406 KLTVNDLVRDKFM---DKKGNISLY--AEIIAGACAGGSQVVFTNPLEIVKIRLQVAGEI 460
                D  +  F+   DK      Y    + +G  AG + + F  PL+  + RL      
Sbjct: 90  NFAFKDKYKQVFLGGVDKNTQFLRYFVGNLASGGAAGATSLCFVYPLDFARTRLAADVGK 149

Query: 461 AGGTKVKA------WSVVKDLGLFGLYKGAKACLLRDVPFSAIYFPAYAHVKAKFADENG 514
           AGG +           + K  G+ GLY+G    +   + + A YF  Y   +    D   
Sbjct: 150 AGGEREFTGLGNCLTKIFKADGITGLYRGFGVSVQGIIIYRAAYFGFYDTARGMLPDPK- 208

Query: 515 YNHPLTLLXXXXXXXXXXXSLVT-PADVIKTRLQVVA--RSGQTTYNGVIDATRKIYAEE 571
              P  +             +V+ P D ++ R+ + +     +  Y   +     IY  E
Sbjct: 209 -KTPFLISWGIAQVVTTVAGIVSYPFDTVRRRMMMQSGRAKSEILYKSTLHCWATIYKTE 267

Query: 572 GARAFWKGAIARVFRSSPQFGVTLVTYEILQRL 604
           G  AF+KGA + + R +    + LV Y+ ++ L
Sbjct: 268 GGNAFFKGAFSNILRGTGG-ALVLVLYDEIKNL 299



 Score = 34.7 bits (76), Expect = 0.002
 Identities = 38/171 (22%), Positives = 67/171 (39%), Gaps = 15/171 (8%)

Query: 424 ISLYAEIIAGACAGGSQVVFTNPLEIVKIRLQV---AGEIAGGTKVKAW-----SVVKDL 475
           ++   + +AG  A         P+E VK+ LQV   + +I+   + K        + K+ 
Sbjct: 8   VAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQ 67

Query: 476 GLFGLYKGAKACLLRDVPFSAIYF---PAYAHVKAKFADENG--YNHPLTLLXXXXXXXX 530
           G    ++G  A ++R  P  A+ F     Y  V     D+N     + +  L        
Sbjct: 68  GFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVGNLASGGAAGA 127

Query: 531 XXXSLVTPADVIKTRL--QVVARSGQTTYNGVIDATRKIYAEEGARAFWKG 579
                V P D  +TRL   V    G+  + G+ +   KI+  +G    ++G
Sbjct: 128 TSLCFVYPLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKADGITGLYRG 178


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 26.2 bits (55), Expect = 0.86
 Identities = 13/40 (32%), Positives = 20/40 (50%)

Query: 103 GLVAFDEFAEVMRKTALHKKLPFNMESTFVRLYFGKDKKR 142
           G+V       ++R  +L+K LP   E  F    FG D++R
Sbjct: 11  GIVCQGTTGNILRGESLNKSLPILHEWKFFDYDFGSDERR 50


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 26.2 bits (55), Expect = 0.86
 Identities = 13/40 (32%), Positives = 20/40 (50%)

Query: 103 GLVAFDEFAEVMRKTALHKKLPFNMESTFVRLYFGKDKKR 142
           G+V       ++R  +L+K LP   E  F    FG D++R
Sbjct: 11  GIVCQGTTGNILRGESLNKSLPILHEWKFFDYDFGSDERR 50


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 26.2 bits (55), Expect = 0.86
 Identities = 13/40 (32%), Positives = 20/40 (50%)

Query: 103 GLVAFDEFAEVMRKTALHKKLPFNMESTFVRLYFGKDKKR 142
           G+V       ++R  +L+K LP   E  F    FG D++R
Sbjct: 11  GIVCQGTTGNILRGESLNKSLPILHEWKFFDYDFGSDERR 50


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 24.2 bits (50), Expect = 3.5
 Identities = 11/28 (39%), Positives = 14/28 (50%)

Query: 635 IGGYQVALPVLTGLETKFGISLPRFSYP 662
           IGGY     V++GL+       PR  YP
Sbjct: 421 IGGYNGLPTVMSGLDESLSDVTPRKKYP 448


>DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.
          Length = 143

 Score = 23.8 bits (49), Expect = 4.6
 Identities = 10/27 (37%), Positives = 17/27 (62%), Gaps = 1/27 (3%)

Query: 276 DILHHTNGRIVYNDLNSITPEQYFKQV 302
           +++   NG+I YN L  + PE  FK++
Sbjct: 80  NVMDKKNGKIRYNLLKKVIPEA-FKEI 105


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.138    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,449
Number of Sequences: 429
Number of extensions: 7182
Number of successful extensions: 26
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 9
length of query: 667
length of database: 140,377
effective HSP length: 62
effective length of query: 605
effective length of database: 113,779
effective search space: 68836295
effective search space used: 68836295
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 47 (23.0 bits)